YetJ - Revision history

Jstuelk at 08:47, 5 August 2014

2014-08-05T08:47:32Z

Jstuelk at 12:56, 11 July 2014

2014-07-11T12:56:35Z

Jstuelk at 12:55, 11 July 2014

2014-07-11T12:55:34Z

Jstuelk at 12:52, 11 July 2014

2014-07-11T12:52:49Z

Heilers: /* Database entries */

2014-07-11T07:52:21Z

‎Database entries

Heilers: /* Database entries */

2014-07-11T07:52:09Z

‎Database entries

Heilers: /* Database entries */

2014-07-11T07:51:48Z

‎Database entries

Heilers: /* Database entries */

2014-07-11T07:49:38Z

‎Database entries

Heilers at 07:47, 11 July 2014

2014-07-11T07:47:11Z

Heilers: /* References */

2014-07-11T07:46:12Z

‎References

← Older revision		Revision as of 08:47, 5 August 2014
Line 1:		Line 1:
−	* '''Description:''' pH-dependent calcium leak <br/><br/>	+	{{#bank: YetJ}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yetJ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| pH-dependent calcium leak~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| export of calcium, homoestasis~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07200 yetJ]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 23 kDa, 9.137~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 642 bp, 214 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yezD]]'', ''[[yetK]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07200 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07200 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07200 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yetJ_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yetJ_787992_788636_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yetJ_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07200]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[metal ion homeostasis (K, Na, Ca, Mg)]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU07200
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07200&redirect=T BSU07200]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12866]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' BI1 family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07200&redirect=T BSU07200]
−
−	* '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=4pgu 4PGU] {{PubMed\|24904158}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31539 O31539]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU07200]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yetJ_787992_788636_1 yetJ] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−
−	~~[[Category:Protein-coding genes]]~~
−
−	~~<pubmed> 24904158~~

@@ Line 38: / Line 38: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[membrane proteins]]}},
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[metal ion homeostasis (K, Na, Ca, Mg)]]}}
 = This gene is a member of the following [[regulons]] =

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' pH-dependent calcium leak <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 9: / Line 9: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || pH-dependent calcium leak
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || pH-sensitive calcium leak across membranes
+|style="background:#ABCDEF;" align="center"|'''Function''' || export of calcium, homoestasis
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07200 yetJ]

@@ Line 34: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 94: / Line 90: @@
 * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07200&redirect=T BSU07200]
-* '''Structure:''' [http://pdbj.org/mine/summary/4pgu 4PGU]
+* '''Structure:''' [http://pdb.org/pdb/explore/explore.do?structureId=4pgu 4PGU] {{PubMed|24904158}}
 * '''UniProt:''' [http://www.uniprot.org/uniprot/O31539 O31539]

← Older revision		Revision as of 07:52, 11 July 2014
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	* '''Structure:''' [http://pdbj.org/mine/summary/4pgu 4PGU]		* '''Structure:''' [http://pdbj.org/mine/summary/4pgu 4PGU]
−

	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31539 O31539]		* '''UniProt:''' [http://www.uniprot.org/uniprot/O31539 O31539]

@@ Line 137: / Line 137: @@
 =References=
-<pubmed> 24904158
 [[Category:Protein-coding genes]]