YdhU/1 - Revision history

134.76.38.147 at 13:05, 2 April 2014

2014-04-02T13:05:50Z

134.76.70.252 at 12:40, 16 May 2013

2013-05-16T12:40:18Z

134.76.70.252 at 12:15, 13 May 2013

2013-05-13T12:15:33Z

Umaeder at 16:18, 26 November 2012

2012-11-26T16:18:43Z

Raphael2215 at 08:42, 10 August 2012

2012-08-10T08:42:42Z

134.76.70.252 at 15:32, 6 August 2012

2012-08-06T15:32:20Z

134.76.70.252 at 15:11, 18 April 2012

2012-04-18T15:11:26Z

134.76.70.252 at 15:15, 12 April 2012

2012-04-12T15:15:46Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-01-27T20:11:55Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

134.76.70.252 at 14:29, 24 January 2012

2012-01-24T14:29:22Z

← Older revision		Revision as of 13:05, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' similar to Mn catalase, inactive pseudogene in strain 168 <br/><br/>	+	{{#bank: YdhU/1}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ydhU/1''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ydhU''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05890 ydhU/1]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| - , -~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 726 bp, -~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[gmuG]]'', ''[[ydhU/2]]''~~
−	\|-
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/ydhU_nucleotide.txt Gene sequence (+200bp) ]'''~~
−	~~\|style="background:~~#~~FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/ydhU_protein.txt Protein sequence]'''~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ydhU_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http~~:/~~/genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-~~1 ~~Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:ydhU/1_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05890]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[resistance against oxidative and electrophile stress]]}},~~
−	~~{{SubtiWiki category\|[[pseudogenes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[Fur regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU05890
−
−	~~===Phenotypes of a mutant ===~~
−	~~thsi is a pseudogene in ''B. subtilis'' 168~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ydhU.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12198]
−
−	~~=== Additional information===~~
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' manganese catalase family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/O05513 O05513]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU05890]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''ydhU'' {{PubMed\|12354229}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-1 ydhU/1] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:''' induced by iron starvation ([[Fur]]) {{PubMed\|12354229}}
−
−	* '''Regulatory mechanism:''' Fur: transcription repression {{PubMed\|12354229}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>12354229 </pubmed>~~
−	~~[[Category:Pseudogenes]]~~

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydhU/1_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydhU/1_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05890]]
 |-
 |}

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU05890 ydhU/1]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05890 ydhU/1]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' ||   - , -

@@ Line 17: / Line 17: @@
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' ||   - , -
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 729 bp, -
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 726 bp, -
 |-
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gmuG]]'', ''[[ydhU/2]]''

@@ Line 1: / Line 1: @@
+* '''Description:''' similar to Mn catalase, inactive pseudogene in strain 168 <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-

@@ Line 100: / Line 100: @@
 * '''Operon:''' ''ydhU'' {{PubMed|12354229}}
-* '''[[Sigma factor]]:'''
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-1 ydhU/1] {{PubMed|22383849}}
 * '''Regulation:''' induced by iron starvation ([[Fur]]) {{PubMed|12354229}}
@@ Line 106: / Line 108: @@
 * '''Regulatory mechanism:''' Fur: transcription repression {{PubMed|12354229}}
 * '''Additional information:'''
 =Biological materials =

← Older revision		Revision as of 20:11, 27 January 2012
Line 44:		Line 44:

	* '''Locus tag:''' BSU05890		* '''Locus tag:''' BSU05890
−
−	~~[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-1 Expression]~~

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===

← Older revision		Revision as of 14:29, 24 January 2012
Line 44:		Line 44:

	* '''Locus tag:''' BSU05890		* '''Locus tag:''' BSU05890
		+
		+	[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydhU_633923_634651_-1 Expression]

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===