YbxA - Revision history

134.76.70.252 at 11:48, 8 April 2014

2014-04-08T11:48:18Z

134.76.38.147 at 12:50, 2 April 2014

2014-04-02T12:50:44Z

Jstuelk at 11:53, 10 January 2014

2014-01-10T11:53:27Z

Jstuelk: /* Reviews */

2013-12-27T17:25:29Z

‎Reviews

134.76.70.252 at 15:02, 11 November 2013

2013-11-11T15:02:33Z

Jstuelk at 15:04, 13 July 2013

2013-07-13T15:04:29Z

Jstuelk at 19:05, 12 July 2013

2013-07-12T19:05:24Z

Jstuelk at 19:04, 12 July 2013

2013-07-12T19:04:30Z

Jstuelk at 18:42, 12 July 2013

2013-07-12T18:42:38Z

Jstuelk at 18:41, 12 July 2013

2013-07-12T18:41:38Z

← Older revision		Revision as of 11:48, 8 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' ATP-binding A1 component of [[ECF transporter]]s<br/><br/>~~	+	{{#bank: YbxA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ybxA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ybaD, ecfA1 ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[ECF transporter]] (ATP-binding protein)~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of micronutrients~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01450 ybxA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YbxA YbxA]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 31 kDa, 4.766~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 843 bp, 281 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[rplQ]]'', ''[[ybaE]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01450 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01450 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01450 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ybxA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybxA_150443_151288_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:ybxA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01450]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[ECF transporter]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU01450
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01450&redirect=T BSU01450]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11067]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' EcfA transporter
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** ([[YbxA]]-[[YbaE]])-[[YbaF]] {{PubMed\|10092453}}
−
−	* '''[[Localization]]:''' membrane associated (via [[YbaF]]) {{PubMed\|10092453}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01450&redirect=T BSU01450]
−
−	* '''Structure:'''
−	** [http://www.rcsb.org/pdb/explore/explore.do?structureId=4huq 4HUQ] (EcfA1-EcfA2-EcfT-FolT complex of ''Lactobacillus brevis''), {{PubMed\|23584589}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P40735 P40735]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU01450]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybxA_150443_151288_1 ybxA] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed>10092453, 20497229,22574898 24362466 </pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed> 23584589 , 21135102 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 90: / Line 91: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 61: / Line 61: @@
 === Additional information===
 =The protein=
@@ Line 79: / Line 76: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 139: / Line 136: @@
 =References=
 == Reviews ==
-<pubmed>10092453, 20497229,22574898 </pubmed>
+<pubmed>10092453, 20497229,22574898 24362466 </pubmed>
 == Original publications ==
 <pubmed> 23584589 , 21135102 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 139: / Line 139: @@
 =References=
 == Reviews ==
-<pubmed>10092453, 20497229, </pubmed>
+<pubmed>10092453, 20497229,22574898 </pubmed>
 == Original publications ==
 <pubmed> 23584589 , 21135102 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01450 ybxA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YbxA YbxA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YbxA YbxA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 4.766

@@ Line 1: / Line 1: @@
-* '''Description:'''  ATP-binding A1 component of ECF [[transporters]]<br/><br/>
+* '''Description:'''  ATP-binding A1 component of [[ECF transporter]]s<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || ECF [[transporters|transporter]] (ATP-binding protein)
+|style="background:#ABCDEF;" align="center"| '''Product''' || [[ECF transporter]] (ATP-binding protein)
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || uptake of micronutrients
@@ Line 40: / Line 40: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[transporters/ other]]}},
+{{SubtiWiki category|[[ECF transporter]]}},
 {{SubtiWiki category|[[membrane proteins]]}}

← Older revision		Revision as of 19:05, 12 July 2013
Line 1:		Line 1:
−	* '''Description:''' ATP-binding A1 component of ~~ECT~~ [[transporters]]<br/><br/>	+	* '''Description:''' ATP-binding A1 component of ECF [[transporters]]<br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to [[ABC transporter]] (ATP-binding protein) <br/><br/>
+* '''Description:'''  ATP-binding A1 component of ECT [[transporters]]<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 6: / Line 6: @@
 |''ybxA''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ybaD ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ybaD, ecfA1 ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || [[ABC transporter]] (ATP-binding protein)
+|style="background:#ABCDEF;" align="center"| '''Product''' || ECF [[transporter]] (ATP-binding protein)
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of micronutrients
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01450 ybxA]
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 114: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybxA_150443_151288_1 ybxA] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 141: / Line 137: @@
 =References=
+== Reviews ==
-<pubmed>10092453,, </pubmed>
+<pubmed>10092453, 20497229, </pubmed>
+== Original publications ==
 [[Category:Protein-coding genes]]