YbcT - Revision history

Umaeder: Undo revision 90548 by Umaeder (Talk)

2009-06-11T12:28:39Z

Undo revision 90548 by Umaeder (Talk)

Umaeder: Undo revision 90782 by Umaeder (Talk)

2009-06-11T12:28:21Z

Undo revision 90782 by Umaeder (Talk)

Umaeder: /* Expression and regulation */

2009-06-11T12:15:03Z

‎Expression and regulation

Umaeder at 11:37, 11 June 2009

2009-06-11T11:37:40Z

CLammers: YbcT moved to SkfD over redirect

2009-02-03T12:12:02Z

YbcT moved to SkfD over redirect

New page

#REDIRECT [[SkfD]]

← Older revision		Revision as of 12:28, 11 June 2009
Line 1:		Line 1:
−	* '''Description:''' sublancin 168 lantibiotic antimicrobial precursor peptide <br/><br/>	+	#REDIRECT [[SkfD]]
−
−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''sunA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yolG ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| sublancin 168 lantibiotic antimicrobial precursor peptide~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| antimicrobial peptide~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 5 kDa, 7.963~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 168 bp, 56 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[sunT]]'', ''[[sunI]]''~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB14066]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [~~[~~Image:sunA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by~~ [~~http://genolist.pasteur.fr/SubtiList/ SubtiList~~]~~</small></div>~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−
−	~~<br/><br/>~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU21480
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sunA.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12682]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' IPP isomerase type 2 family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:'''
−
−	* '''Localization:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P68577 P68577]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU21480]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''sunA''
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17720793 PubMed]
−
−	* '''Regulatory mechanism:''' activated by [[YvrHb]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed], repressed by [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed], activated by [[Abh]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/17720793 PubMed]
−
−	* '''Additional information:''' the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>16306698, 19465659 </pubmed>~~
−
−	~~# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed~~]

@@ Line 93: / Line 93: @@
 * '''Regulation:'''
-** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
+** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17720793 PubMed]
 * '''Regulatory mechanism:''' activated by [[YvrHb]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed], repressed by [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed], activated by [[Abh]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed]
 ** [[AbrB]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
 * '''Additional information:'''  the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]

@@ Line 93: / Line 93: @@
 * '''Regulation:'''
-** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17720793 PubMed]
+** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
 * '''Regulatory mechanism:''' activated by [[YvrHb]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed], repressed by [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed], activated by [[Abh]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed]
 ** [[AbrB]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
 * '''Additional information:'''  the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]

← Older revision		Revision as of 11:37, 11 June 2009
Line 1:		Line 1:
−	#~~REDIRECT~~ [[~~SkfD~~]]	+	* '''Description:''' sublancin 168 lantibiotic antimicrobial precursor peptide <br/><br/>
		+
		+	{\| align="right" border="1" cellpadding="2"
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Gene name'''
		+	\|''sunA''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yolG ''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| sublancin 168 lantibiotic antimicrobial precursor peptide
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| antimicrobial peptide
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 5 kDa, 7.963
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 168 bp, 56 aa
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[sunT]]'', ''[[sunI]]''
		+	\|-
		+	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB14066]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
		+	\|-
		+	\|colspan="2" \| '''Genetic context''' <br/> [[Image:sunA_context.gif]]
		+	<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
		+	\|-
		+	\|}
		+
		+	__TOC__
		+
		+	<br/><br/>
		+
		+	=The gene=
		+
		+	=== Basic information ===
		+
		+	* '''Locus tag:''' BSU21480
		+
		+	===Phenotypes of a mutant ===
		+
		+	=== Database entries ===
		+
		+	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sunA.html]
		+
		+	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12682]
		+
		+	=== Additional information===
		+
		+
		+	=The protein=
		+
		+	=== Basic information/ Evolution ===
		+
		+	* '''Catalyzed reaction/ biological activity:'''
		+
		+	* '''Protein family:''' IPP isomerase type 2 family (according to Swiss-Prot)
		+
		+	* '''Paralogous protein(s):'''
		+
		+	=== Extended information on the protein ===
		+
		+	* '''Kinetic information:'''
		+
		+	* '''Domains:'''
		+
		+	* '''Modification:'''
		+
		+	* '''Cofactor(s):'''
		+
		+	* '''Effectors of protein activity:'''
		+
		+	* '''Interactions:'''
		+
		+	* '''Localization:''' cell membrane (according to Swiss-Prot)
		+
		+	=== Database entries ===
		+
		+	* '''Structure:'''
		+
		+	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P68577 P68577]
		+
		+	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU21480]
		+
		+	* '''E.C. number:'''
		+
		+	=== Additional information===
		+
		+	=Expression and regulation=
		+
		+	* '''Operon:''' ''sunA''
		+
		+	* '''[[Sigma factor]]:'''
		+
		+	* '''Regulation:'''
		+	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17720793 PubMed]
		+
		+	* '''Regulatory mechanism:''' activated by [[YvrHb]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed], repressed by [[AbrB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed], activated by [[Abh]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19465659 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/17720793 PubMed]
		+
		+	* '''Additional information:''' the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
		+
		+	=Biological materials =
		+
		+	* '''Mutant:'''
		+
		+	* '''Expression vector:'''
		+
		+	* '''lacZ fusion:'''
		+
		+	* '''GFP fusion:'''
		+
		+	* '''two-hybrid system:'''
		+
		+	* '''Antibody:'''
		+
		+	=Labs working on this gene/protein=
		+
		+	=Your additional remarks=
		+
		+	=References=
		+
		+	<pubmed>16306698, 19465659 </pubmed>
		+
		+	# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]