TatAY - Revision history

Jstuelk: /* Reviews */

2015-08-07T08:38:21Z

‎Reviews

Jstuelk: /* Original publications */

2015-08-05T17:16:46Z

‎Original publications

Jstuelk: /* Basic information/ Evolution */

2015-08-05T17:12:36Z

‎Basic information/ Evolution

Jstuelk: /* Reviews */

2015-07-03T16:46:32Z

‎Reviews

Jstuelk: /* References */

2014-06-02T16:07:03Z

‎References

134.76.70.252 at 11:45, 8 April 2014

2014-04-08T11:45:09Z

134.76.38.147 at 13:06, 2 April 2014

2014-04-02T13:06:16Z

Jstuelk: /* Original publications */

2014-03-22T09:21:46Z

‎Original publications

Jstuelk at 11:47, 17 December 2013

2013-12-17T11:47:08Z

Jstuelk at 14:09, 6 December 2013

2013-12-06T14:09:09Z

← Older revision		Revision as of 08:38, 7 August 2015
Line 1:		Line 1:
−	* '''Description:''' component of the [[TatAY]]-[[TatCY]] twin-arginine translocase<br/><br/>	+	{{#bank: TatAY}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''tatAY''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ydiI ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| component of the twin-arginine translocation pathway~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| TAT protein secretion~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05980 tatAY]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=TatAY TatAY]
−	\|-
−	~~\|colspan="2" style="background:~~#~~FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http~~:~~//subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=TatAY~~ TatAY~~]'''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 5 kDa, 6.558~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 171 bp, 57 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[rex]]'', ''[[tatCY]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU05980 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU05980 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU05980 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:tatAY_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=tatAY_647760_647933_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:tatAY_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05980]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[protein secretion]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU05980
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU05980&redirect=T BSU05980]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12206]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** secretion of [[EfeB]] and of [[YkuE]]
−	** delivers [[QcrA]] to the membrane {{PubMed\|23256564}}
−
−	* '''Protein family:''' tatA/E family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[TatAY]]-[[TatCY]] {{PubMed\|23180473,15554971}}
−	** [[WprA]]-[[TatAY]] {{PubMed\|23180473}}
−	** [[TatAY]]-[[TatAD]] {{PubMed\|23180473}}
−	** [[TatAC]]-[[TatAY]] {{PubMed\|23180473}}
−
−	* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU05980&redirect=T BSU05980]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O05522 O05522]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU05980]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−	* [[TatAY]]-[[TatCY]]-dependent export of [[YkuE]] and [[YwbN]] requires a functional [[WprA]] {{PubMed\|23180473}}
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−	** ''[[ydiG]]-[[rex]]-[[tatAY]]-[[tatCY]]'' {{PubMed\|22383849}}
−	** ''[[tatAY]]-[[tatCY]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=tatAY_647760_647933_1 tatAY] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:''' constitutitvely expressed {{PubMed\|22383849}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 22683878 24140208 25975269</pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564 24652282 24875903 26239117</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 150: / Line 150: @@
 == Original publications ==
-<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564 24652282 24875903 </pubmed>
+<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564 24652282 24875903 26239117</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 70: / Line 70: @@
 * '''Catalyzed reaction/ biological activity:'''
-** secretion of [[YwbN]] and of [[YkuE]]
+** secretion of [[EfeB]] and of [[YkuE]]
 ** delivers [[QcrA]] to the membrane {{PubMed|23256564}}

@@ Line 147: / Line 147: @@
 =References=
 == Reviews ==
-<pubmed> 22683878 24140208 </pubmed>
+<pubmed> 22683878 24140208 25975269</pubmed>
 == Original publications ==
 <pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564 24652282 24875903 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 149: / Line 149: @@
 <pubmed> 22683878 24140208 </pubmed>
 == Original publications ==
-<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564 24652282</pubmed>
+<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564 24652282 24875903 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 17: / Line 17: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=TatAY TatAY]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in  [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=TatAY TatAY]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 5 kDa, 6.558

@@ Line 56: / Line 56: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 97: / Line 98: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 68: / Line 68: @@
 === Basic information/ Evolution ===
-* '''Catalyzed reaction/ biological activity:'''  secretion of [[YwbN]] and of [[YkuE]]
+* '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:''' tatA/E family (according to Swiss-Prot)
@@ Line 145: / Line 147: @@
 <pubmed> 22683878 24140208 </pubmed>
 == Original publications ==
-<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473</pubmed>
+<pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473 23256564</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 78: / Line 78: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 143: / Line 143: @@
 =References=
 == Reviews ==
-<pubmed> 22683878 </pubmed>
+<pubmed> 22683878 24140208 </pubmed>
 == Original publications ==
 <pubmed>15554971, 19383693 21479178 22041895 22767609 22383849 23180473</pubmed>
 [[Category:Protein-coding genes]]