Sr1 - Revision history

134.76.38.147 at 13:36, 2 April 2014

2014-04-02T13:36:55Z

134.76.70.252 at 14:16, 18 November 2013

2013-11-18T14:16:26Z

134.76.70.252 at 12:43, 13 May 2013

2013-05-13T12:43:49Z

Umaeder at 15:36, 2 January 2013

2013-01-02T15:36:08Z

Awiechert at 10:01, 26 November 2012

2012-11-26T10:01:34Z

Awiechert at 09:00, 15 November 2012

2012-11-15T09:00:54Z

Jstuelk: /* References */

2012-10-08T14:43:45Z

‎References

Jstuelk: /* References */

2012-10-08T14:42:51Z

‎References

134.76.70.252 at 09:11, 7 August 2012

2012-08-07T09:11:54Z

Jstuelk: /* Extended information on the protein */

2011-08-10T16:07:19Z

‎Extended information on the protein

← Older revision		Revision as of 13:36, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' small regulatory RNA controlling [[AhrC]] expression, regulatory peptide <br/><br/>~~	+	{{#bank: Sr1}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''sr1''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ykzW ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[small RNAs\|small regulatory RNA]], regulatory peptide~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of arginine metabolism and glycolysis~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14629 Sr1]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this peptide in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YkzW YkzW]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 4.4 kDa, 4.027~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 205 bp (RNA), 117 bp (ORF), 39 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[slp]]'', ''[[speA]]''~~
−	\|-
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/sr1_nucleotide.txt Gene sequence ]'''~~
−	~~\|style="background:#FAF8CC;" align="center"\|~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:sr1_context.gif]]~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−
−	~~<br/><br/><br/>~~
−
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[biosynthesis/ acquisition of amino acids]]}},~~
−	~~{{SubtiWiki category\|[[utilization of amino acids]]}},~~
−	~~{{SubtiWiki category\|[[ncRNA]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CcpN regulon]]}}~~
−
−	~~=The [[SR1 regulon]]: ''[[ahrC]]''=~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU14629
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	~~=== Additional information===~~
−	~~Located between the ''[[slp]]'' and ''[[speA]]'' genes.~~
−
−
−
−
−	~~=The RNA=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' hybridizes to ''[[ahrC]]'' mRNA and inhibits [[AhrC]] translation. [http://www.ncbi.nlm.nih.gov/sites/entrez/17020585 PubMed]
−
−	~~=== Extended information on the RNA===~~
−
−	* '''Kinetic information'''
−
−	* '''Interactions:''' Binds ''[[ahrC]]'' mRNA [http://www.ncbi.nlm.nih.gov/sites/entrez/17020585 PubMed]
−
−	* '''Localization'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure''':
−
−	~~=== Additional information===~~
−
−	Information on the structure of the RNA can be found in [http://www.ncbi.nlm.nih.gov/pubmed/17020585?ordinalpos=8&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum Heidrich ''et al''., 2006 ]
−
−	~~=The peptide=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' the peptide controls the stability of the ''[[cggR]]-[[gapA]]'' mRNA {{PubMed\|20444087}}
−
−	* '''Protein family:''' the peptide is conserved in bacilli
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[GapA]]-[[YkzW]] {{PubMed\|20444087}}
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/C0H410 C0H410]
−
−	* '''KEGG entry:'''
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' sr1 [http://www.ncbi.nlm.nih.gov/sites/entrez/16164558 PubMed]
−
−	* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16164558 PubMed]
−
−	* '''Regulation:''' Repressed in the presence of glucose by [[CcpN]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16164558 PubMed]
−
−	* '''Regulatory mechanism:''' transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16164558 PubMed]
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:''' 168 sr1::cat, available in [[Brantl]] lab
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Sabine Brantl \|Sabine Brantl]], Bacterial Genetics, Friedrich-Schiller-University of Jena, Germany [http://www.uni-jena.de/AG_Bakteriengenetik_(_Doz__Dr__Sabine_Brantl_).html homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~'''Additional publications:''' {{PubMed\|23034808}}~~
−	~~<pubmed>16164558 17020585 17576690, 20444087 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14629 Sr1]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this peptide in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YkzW YkzW]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this peptide in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YkzW YkzW]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 4.4 kDa, 4.027

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of arginine metabolism and glycolysis
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU14629 Sr1]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14629 Sr1]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this peptide in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YkzW YkzW]

@@ Line 1: / Line 1: @@
-* '''Description:''' small regulatory RNA controlling [[AhrC]] expression/ regulatory peptide <br/><br/>
+* '''Description:''' small regulatory RNA controlling [[AhrC]] expression, regulatory peptide <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || [[small RNAs|small regulatory RNA]]/ regulatory peptide
+|style="background:#ABCDEF;" align="center"| '''Product''' || [[small RNAs|small regulatory RNA]], regulatory peptide
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of arginine metabolism and glycolysis

← Older revision		Revision as of 10:01, 26 November 2012
Line 1:		Line 1:
−	* '''Description:''' ~~[[small RNAs\|~~small regulatory RNA]] controlling ''[[~~ahrC~~]]'' expression, peptide ~~controlling the stability of the ''[[cggR]]-[[gapA]]'' mRNA~~ <br/><br/>	+	* '''Description:''' small regulatory RNA controlling [[AhrC]] expression/ regulatory peptide <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 18: / Line 18: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this peptide in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YkzW YkzW]
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 4.4 kDa, 3.89
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 4.4 kDa, 4.027
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 205 bp (RNA), 120 bp (ORF), 39 aa
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 205 bp (RNA), 117 bp (ORF), 39 aa
 |-
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[slp]]'', ''[[speA]]''
@@ Line 50: / Line 50: @@
 === Basic information ===
-* '''Locus tag:'''
+* '''Locus tag:''' BSU14629
 ===Phenotypes of a mutant ===

@@ Line 152: / Line 152: @@
 =References=
+'''Additional publications:''' {{PubMed|23034808}}
-<pubmed>16164558 17020585 17576690, 20444087 23034808 </pubmed>
+<pubmed>16164558 17020585 17576690, 20444087 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 106: / Line 106: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
 ** [[GapA]]-[[YkzW]] {{PubMed|20444087}}
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===