SpoVID - Revision history

Jstuelk: /* Original publications */

2015-07-20T08:19:39Z

‎Original publications

Jstuelk: /* References */

2014-09-29T09:31:00Z

‎References

134.76.38.147 at 14:24, 2 April 2014

2014-04-02T14:24:53Z

Jstuelk at 18:18, 4 January 2014

2014-01-04T18:18:43Z

134.76.70.252 at 09:02, 12 November 2013

2013-11-12T09:02:36Z

Jstuelk at 15:01, 13 August 2013

2013-08-13T15:01:36Z

134.76.70.252 at 14:10, 16 May 2013

2013-05-16T14:10:44Z

134.76.70.252 at 10:54, 14 May 2013

2013-05-14T10:54:33Z

134.76.70.252 at 13:29, 13 May 2013

2013-05-13T13:29:46Z

Jstuelk at 11:25, 30 November 2012

2012-11-30T11:25:26Z

← Older revision		Revision as of 08:19, 20 July 2015
Line 1:		Line 1:
−	* '''Description:~~''' spore coat morphogenetic protein, promotes encasement of the spore <br/><br/>~~	+	{{#bank: SpoVID}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''spoVID''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| spore coat morphogenetic protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| spore coat assembly~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28110 spoVID]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoVID SpoVID]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 64 kDa, 3.999~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1725 bp, 575 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ysxE]]'', ''[[hemL]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28110 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:spoVID_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVID_2871022_2872749_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:spoVID_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28110]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU28110
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU28110&redirect=T BSU28110]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoVID-ysxE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10346]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[SpoIVA]]-[[SpoVID]] {{PubMed\|19702880,22262582}}
−	** [[SpoVID]]-[[SafA]] {{PubMed\|19702880,11325931,22262582}}
−	** [[SpoIVA]]-[[SpoVM]]-[[SpoVID]] {{PubMed\|19775244}}
−	** [[SpoVID]]-[[CotE]] {{PubMed\|23178679,22773792}}
−
−	* '''[[Localization]]:'''
−	** spore coat (basement), localization depends on [[SpoIVA]] {{PubMed\|22773792,22171814}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU28110&redirect=T BSU28110]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P37963 P37963]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28110]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[spoVID]]-[[ysxE]]'' {{PubMed\|15699190,8449878}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVID_2871022_2872749_-1 spoVID] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigE]] {{PubMed\|15699190,8449878}}
−
−	* '''Regulation:'''
−	** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed\|15699190,8449878}}
−	** repressed by casamino acids {{PubMed\|12107147}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** 1A639 ( ''spoVID''::''erm''), {{PubMed\|3015878}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A639&Search=1A639 BGSC]
−	** 1S127 ( ''spoVID''::''erm''), {{PubMed\|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S127&Search=1S127 BGSC]
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	* [[Adriano Henriques]], Lisbon, Portugal [http://www.itqb.unl.pt/research/biology/microbial-development homepage]
−	* [[Charles Moran]], Emory University, NC, USA [http://www.microbiology.emory.edu/moran_c.html homepage]
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed>23202530</pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>16950916,11325931,12107147,10714986,19775244 15699190,8449878 22773792 22171814 23178679 25259857 19702880,22262582</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 149: / Line 149: @@
 <pubmed>23202530</pubmed>
 == Original publications ==
-<pubmed>16950916,11325931,12107147,10714986,19775244 15699190,8449878 22773792 22171814 23178679 19702880,22262582</pubmed>
+<pubmed>16950916,11325931,12107147,10714986,19775244 15699190,8449878 22773792 22171814 23178679 25259857  19702880,22262582</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 54: / Line 54: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoVID-ysxE.html]
@@ Line 94: / Line 95: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 76: / Line 76: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 144: / Line 144: @@
 =References=
 <pubmed>16950916,11325931,12107147,10714986,19775244 15699190,8449878 22773792 22171814 23178679 19702880,22262582</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28110 spoVID]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SpoVID SpoVID]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoVID SpoVID]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 64 kDa, 3.999

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVID_2871022_2872749_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoVID_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVID_2871022_2872749_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoVID_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28110]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ysxE]]'', ''[[hemL]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28110 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28110 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:spoVID_context.gif]]

@@ Line 88: / Line 88: @@
 ** [[SpoVID]]-[[SafA]] {{PubMed|19702880,11325931,22262582}}
 ** [[SpoIVA]]-[[SpoVM]]-[[SpoVID]] {{PubMed|19775244}}
-** [[SpoVID]]-[[CotE]] {{PubMed|22773792}}
+** [[SpoVID]]-[[CotE]] {{PubMed|23178679,22773792}}
 * '''[[Localization]]:'''
@@ Line 110: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVID_2871022_2872749_-1 spoVID] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigE]] {{PubMed|15699190,8449878}}
+* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,8449878}}
 * '''Regulation:'''
@@ Line 145: / Line 145: @@
 =References=
 '''Additional publications:''' {{PubMed|19702880,22262582}}
-<pubmed>16950916,11325931,12107147,10714986,19775244 15699190,8449878 22773792 22171814 </pubmed>
+<pubmed>16950916,11325931,12107147,10714986,19775244 15699190,8449878 22773792 22171814 23178679 </pubmed>
 [[Category:Protein-coding genes]]