SpoIIIJ - Revision history

Jstuelk: /* Reviews */

2015-06-12T16:04:59Z

‎Reviews

Jstuelk: /* Original publications */

2015-04-10T10:59:19Z

‎Original publications

Jstuelk: /* Original publications */

2014-11-02T15:41:49Z

‎Original publications

Jstuelk at 14:29, 19 October 2014

2014-10-19T14:29:16Z

Jstuelk at 08:07, 19 August 2014

2014-08-19T08:07:51Z

Jstuelk at 08:07, 19 August 2014

2014-08-19T08:07:20Z

Jstuelk at 08:06, 19 August 2014

2014-08-19T08:06:04Z

134.76.70.252 at 10:10, 17 April 2014

2014-04-17T10:10:05Z

134.76.38.147 at 15:19, 2 April 2014

2014-04-02T15:19:11Z

Jstuelk: /* Reviews */

2014-01-21T10:28:19Z

‎Reviews

← Older revision		Revision as of 16:04, 12 June 2015
Line 1:		Line 1:
−	* '''Description:~~''' Sec-independent membrane protein translocase, essential for [[SigG]] activity at stage III, involved in the assembly of the [[SpoIIIAH]]-[[SpoIIQ]] complex <br/><br/>~~	+	{{#bank: SpoIIIJ}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''spoIIIJ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''spo0J87 ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| membrane protein translocase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| membrane insertion of proteins and protein secretion~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU41040 spoIIIJ]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoIIIJ SpoIIIJ]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 29 kDa, 9.992~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 783 bp, 261 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[jag]]'', ''[[rnpA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU41040 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU41040 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU41040 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ThdF_jag_spoIIIJ_rnpA_rpmH_context.png]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxaAA_4213823_4214608_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:spoIIIJ_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU41040]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[protein secretion]]}},~~
−	~~{{SubtiWiki category\|[[sporulation/ other]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU41040
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU41040&redirect=T BSU41040]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIIJ-jag.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10062]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' membrane protein translocase, facilitates insertion of [[SpoIIIAE]] into the membrane [http://www.ncbi.nlm.nih.gov/sites/entrez/18485064 PubMed]
−
−	* '''Protein family:''' YidC/Oxa1/Alb3 family {{PubMed\|20800571,21194367,15802250}}
−
−	* '''Paralogous protein(s):''' [[YidC2]], one of the two proteins has to be present for viability [http://www.ncbi.nlm.nih.gov/sites/entrez/17114254 PubMed]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** the active form is a dimer {{PubMed\|25133632}}
−	** [[SpoIIIAE]]-[[SpoIIIJ]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18820020 PubMed]
−	** [[SpoIIIJ]]-[[MifM]] {{PubMed\|22864117}}
−
−	* '''[[Localization]]:'''
−	** membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU41040&redirect=T BSU41040]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/Q01625 Q01625]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU41040]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[spoIIIJ]]-[[jag]]'' {{PubMed\|1487728}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxaAA_4213823_4214608_-1 spoIIIJ] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|1487728}}
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1044 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Richard Losick]], Harvard University, Cambridge, USA [http://www.mcb.harvard.edu/Losick/ homepage]~~
−
−	~~[[Adriano Henriques]], Lisbon, Portugal [http://www.itqb.unl.pt/research/biology/microbial-development homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed>22688815 20800571,21194367,15802250</pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834 19717609 19779460 22864117 24443530 25133632 25313395 25359772 25855636</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 150: / Line 150: @@
 == Original publications ==
-<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632 25313395 25359772 </pubmed>
+<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632 25313395 25359772 25855636</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 150: / Line 150: @@
 == Original publications ==
-<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632 25313395 </pubmed>
+<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632 25313395 25359772 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 150: / Line 150: @@
 == Original publications ==
-<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632</pubmed>
+<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632 25313395 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 08:07, 19 August 2014
Line 1:		Line 1:
−	* '''Description:''' Sec-independent membrane protein translocase, essential for [[SigG]] activity at stage III, involved in the assembly of the [[~~SpoIIIA~~]]-[[SpoIIQ]] complex <br/><br/>	+	* '''Description:''' Sec-independent membrane protein translocase, essential for [[SigG]] activity at stage III, involved in the assembly of the [[SpoIIIAH]]-[[SpoIIQ]] complex <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 89: / Line 89: @@
 * '''[[SubtInteract|Interactions]]:'''
 ** [[SpoIIIAE]]-[[SpoIIIJ]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18820020 PubMed]
 ** [[SpoIIIJ]]-[[MifM]] {{PubMed|22864117}}
@@ Line 149: / Line 150: @@
 == Original publications ==
-<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 </pubmed>
+<pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 25133632</pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 10:10, 17 April 2014
Line 120:		Line 120:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1044 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 58: / Line 58: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIIJ-jag.html]
@@ Line 95: / Line 96: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 143: / Line 143: @@
 =References=
 ==Reviews==
-<pubmed>22688815 </pubmed>
+<pubmed>22688815 20800571,21194367,15802250</pubmed>
 == Original publications ==
 <pubmed>18485064,12813085,18820020,1487728, 23852076,18763711 17114254,11889108 15995216 12586834  19717609 19779460 22864117 24443530 </pubmed>
 [[Category:Protein-coding genes]]