SpoIIIE - Revision history

Jstuelk: /* Original publications */

2015-05-08T07:55:17Z

‎Original publications

Jstuelk: /* Original publications */

2014-05-05T08:31:22Z

‎Original publications

134.76.38.147 at 13:46, 2 April 2014

2014-04-02T13:46:27Z

Jstuelk at 18:38, 4 December 2013

2013-12-04T18:38:17Z

Jstuelk: /* Original publications */

2013-08-15T12:54:08Z

‎Original publications

Jstuelk: /* References */

2013-08-15T12:41:08Z

‎References

Jstuelk at 12:36, 15 August 2013

2013-08-15T12:36:09Z

Jstuelk: /* Reviews */

2013-08-15T12:31:17Z

‎Reviews

Jstuelk: /* Reviews */

2013-07-29T17:13:58Z

‎Reviews

134.76.70.252 at 13:24, 16 May 2013

2013-05-16T13:24:57Z

← Older revision		Revision as of 07:55, 8 May 2015
Line 1:		Line 1:
−	* '''Description:~~''' ATP-dependent DNA translocase, resolution of chromosomal dimers after DNA replication, transports the forespore chromosome across the sporulation septum <br/><br/>~~	+	{{#bank: SpoIIIE}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''spoIIIE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| ATP-dependent DNA translocase required for chromosome~~
−	~~partitioning through the septum into the forespore~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| chromosome partition during sporulation~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16800 spoIIIE]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 86 kDa, 6.757~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 2361 bp, 787 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ylzJ]]'', ''[[ymfC]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16800 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16800 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16800 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:spoIIIE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIIE_1752272_1754641_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:spoIIIE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16800]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[DNA condensation/ segregation]]}},~~
−	~~{{SubtiWiki category\|[[sporulation/ other]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU16800
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU16800&redirect=T BSU16800]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIIE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10763]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** transports the forespore chromosome across the sporulation septum {{PubMed\|20516200}}
−	** translocates septum-entrapped DNA only when septum closure precedes complete segregation of chromosomes {{PubMed\|19818024}}
−	** the two DNA translocases [[SftA]] and [[SpoIIIE]] synergistically affect chromosome dimer resolution presumably by positioning the dif sites in close proximity, before or after completion of cell division, respectively {{PubMed\|21239579}}
−	** binds DNA sequences named SRS for SpoIIIE recognition sequence, GAGAAGGG {{PubMed\|18391964}}
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):''' [[SftA]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−	** N-terminal transmembrane domain (4 helices) {{PubMed\|24297254}}
−	** 134 aa linker {{PubMed\|24297254}}
−	** 512 aa motor domain at the C-terminus {{PubMed\|24297254}}
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** assembles into ∼45 nm complexes {{PubMed\|23667326}}
−
−	* '''[[Localization]]:'''
−	** transmembrane domain mediates dynamic localization to active division sites {{PubMed\|20516200}}
−	** complexes are recruited to nascent sites of septation, and are subsequently escorted by the constriction machinery to the center of [[sporulation]] and division septa {{PubMed\|23667326}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU16800&redirect=T BSU16800]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P21458 P21458]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU16800]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''spoIIIE'' {{PubMed\|3129532}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIIE_1752272_1754641_1 spoIIIE] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|2507870}}
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed> 22047950 22934648 23400100 </pubmed>~~
−	~~==Original publications==~~
−	<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 11134515 24297254 24769697 </pubmed>
−	~~[[Category:Protein-coding genes]]~~

@@ Line 151: / Line 151: @@
 <pubmed> 22047950 22934648 23400100 </pubmed>
 ==Original publications==
-<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 11134515 24297254</pubmed>
+<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 11134515 24297254 24769697 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 57: / Line 57: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIIE.html]
@@ Line 102: / Line 103: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 73: / Line 73: @@
 ** translocates septum-entrapped DNA only when septum closure precedes complete segregation of chromosomes {{PubMed|19818024}}
 ** the two DNA translocases [[SftA]] and [[SpoIIIE]] synergistically affect chromosome dimer resolution presumably by positioning the dif sites in close proximity, before or after completion of cell division, respectively {{PubMed|21239579}}
 * '''Protein family:'''
@@ Line 82: / Line 83: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 145: / Line 149: @@
 <pubmed> 22047950 22934648 23400100 </pubmed>
 ==Original publications==
-<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 11134515 </pubmed>
+<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 11134515 24297254</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 145: / Line 145: @@
 <pubmed> 22047950 22934648 23400100 </pubmed>
 ==Original publications==
-<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 </pubmed>
+<pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 11134515 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 12:36, 15 August 2013
Line 1:		Line 1:
−	* '''Description:''' ATP-dependent DNA translocase, transports the forespore chromosome across the sporulation septum <br/><br/>	+	* '''Description:''' ATP-dependent DNA translocase, resolution of chromosomal dimers after DNA replication, transports the forespore chromosome across the sporulation septum <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 143: / Line 143: @@
 =References=
 ==Reviews==
-<pubmed> 22047950 </pubmed>
+<pubmed> 22047950 22934648</pubmed>
 ==Original publications==
 <pubmed> 18160039, 18593879, 3129532 2507870 18593879 23559069 9150232,2492502, 11062134,9155041, 14680637,7797072, 7567988, 2507870,8160014,9515703, 19818024 19788545 20298190 20516200 21239579 18391964 23667326 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 30: / Line 30: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIIE_1752272_1754641_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIIE_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIIE_1752272_1754641_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIIE_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16800]]
 |-
 |}