SpoIIID - Revision history

134.76.38.147 at 15:00, 2 April 2014

2014-04-02T15:00:31Z

Jstuelk at 17:22, 4 March 2014

2014-03-04T17:22:19Z

134.76.70.252 at 11:50, 7 January 2014

2014-01-07T11:50:56Z

134.76.70.252 at 14:47, 16 May 2013

2013-05-16T14:47:10Z

134.76.70.252 at 11:28, 14 May 2013

2013-05-14T11:28:45Z

134.76.70.252 at 14:03, 13 May 2013

2013-05-13T14:03:21Z

134.76.70.252 at 16:47, 7 August 2012

2012-08-07T16:47:52Z

Jstuelk at 16:50, 29 July 2012

2012-07-29T16:50:29Z

134.76.70.252 at 10:54, 23 April 2012

2012-04-23T10:54:12Z

134.76.70.252 at 08:06, 17 April 2012

2012-04-17T08:06:17Z

← Older revision		Revision as of 15:00, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' transcriptional regulator (repressor or activator) of a subset of [[sigE\|sigma-E]]-dependent genes <br/><br/>~~	+	{{#bank: SpoIIID}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''spoIIID''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| transcriptional regulator~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| regulation of mother cell gene expression~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36420 spoIIID]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=spoIIID spoIIID]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 10 kDa, 9.496~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 279 bp, 93 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[mbl]]'', ''[[usd]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36420 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:spoIIID_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIID_3748421_3748702_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:spoIIID_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36420]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transcription factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}}~~
−
−	~~=The [[SpoIIID regulon]]=~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU36420
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/usd-spoIIID-mbl-flhOP.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10408]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' binds its DNA targets as a monomeric protein (possible due to the two DNA-binding motifs) {{PubMed\|20061473}}
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:''' two DNA-binding regions: HTH at the N-terminus and a basic region near the C-terminus {{PubMed\|20061473}}
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?structureId=2L0K 2L0K] (complex with DNA)
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P15281 P15281]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU36420]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[usd]]-[[spoIIID]]-[[mbl]]-[[flhO]]-[[flhP]]'' {{PubMed\|9023218,7836311}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIID_3748421_3748702_-1 spoIIID] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigE]] {{PubMed\|9023218}}
−
−	* '''Regulation:'''
−	** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed\|9023218}}
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>15383836,1469717,7896717,1900494,8231808,9023218,2112673,1691789,10788508,1744038,7966271,2514119,1518043,17693505,9006059, 20061473 17890309 17693499 7836311 24584501 22463703</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 82: / Line 78: @@
 * '''Kinetic information:'''
-* '''Domains:''' two DNA-binding regions: HTH at the N-terminus and a basic region near the C-terminus {{PubMed|20061473}}
+* '''[[Domains]]:''' two DNA-binding regions: HTH at the N-terminus and a basic region near the C-terminus {{PubMed|20061473}}
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 111: / Line 107: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIID_3748421_3748702_-1 spoIIID] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigE]] {{PubMed|9023218}}
+* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|9023218}}
 * '''Regulation:'''
@@ Line 138: / Line 134: @@
 =References=
-'''Additional publications:''' {{PubMed|22463703}}
+<pubmed>15383836,1469717,7896717,1900494,8231808,9023218,2112673,1691789,10788508,1744038,7966271,2514119,1518043,17693505,9006059, 20061473 17890309 17693499 7836311 24584501 22463703</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36420 spoIIID]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn], [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=spoIIID spoIIID]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 9.496

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIID_3748421_3748702_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIID_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIID_3748421_3748702_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoIIID_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36420]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mbl]]'', ''[[usd]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36420 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36420 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:spoIIID_context.gif]]

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of mother cell gene expression
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn], [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall]'''

← Older revision		Revision as of 16:50, 29 July 2012
Line 1:		Line 1:
−	* '''Description:''' transcriptional regulator of [[sigE\|sigma-E~~]]- and [[sigK\|sigma-K~~]]-dependent genes <br/><br/>	+	* '''Description:''' transcriptional regulator (repressor or activator) of a subset of [[sigE\|sigma-E]]-dependent genes <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 99: / Line 99: @@
 * '''Operon:''' ''[[usd]]-[[spoIIID]]-[[mbl]]-[[flhO]]-[[flhP]]'' {{PubMed|9023218,7836311}}
-* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|9023218}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIIID_3748421_3748702_-1 spoIIID] {{PubMed|22383849}}
 * '''Regulation:'''
@@ Line 105: / Line 107: @@
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =