SndB - Revision history

134.76.70.252 at 11:26, 17 April 2014

2014-04-17T11:26:10Z

Jstuelk at 13:34, 5 January 2014

2014-01-05T13:34:23Z

Jstuelk at 12:05, 18 August 2013

2013-08-18T12:05:49Z

Jstuelk at 11:52, 18 August 2013

2013-08-18T11:52:21Z

Jstuelk at 11:48, 18 August 2013

2013-08-18T11:48:32Z

Jstuelk at 11:42, 18 August 2013

2013-08-18T11:42:31Z

Jstuelk: Jstuelk moved page YxeP to SndB: 23944997

2013-08-18T11:37:11Z

Jstuelk moved page YxeP to SndB: 23944997

Jstuelk: /* Basic information/ Evolution */

2013-08-18T11:35:29Z

‎Basic information/ Evolution

134.76.70.252 at 14:58, 16 May 2013

2013-05-16T14:58:31Z

134.76.70.252 at 11:40, 14 May 2013

2013-05-14T11:40:52Z

← Older revision		Revision as of 11:26, 17 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' sulphur compound N-deacetylase, the ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' operon may be implicated in the utilization of a modified cysteine variant <br/><br/>~~	+	{{#bank: SndB}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''sndB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yxeP ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| sulphur compound N-deacetylase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39470 yxeP]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 41 kDa, 5.322~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1140 bp, 380 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yxeQ]]'', ''[[yxeO]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39470 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39470 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39470 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yxeP_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yxeP_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39470]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CymR regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU39470
−
−	~~===Phenotypes of a mutant ===~~
−	* a ''[[sndA]] [[sndB]] [[sndC]]'' triple mutant does not grow with N-acetyl cysteine {{PubMed\|23944997}}
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxeKLMNOPQ.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11892]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' peptidase M20 family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[SndA]], [[SndC]], [[DapI]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1YSJ 1YSJ]
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54955 P54955]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU39470]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed\|10746760}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 sndB] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|16513748}}
−
−	* '''Regulation:'''
−	** repressed in the presence of cysteine ([[CymR]]) {{PubMed\|16513748}}
−
−	* '''Regulatory mechanism:'''
−	** [[CymR]]: transcription repression {{PubMed\|16513748}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>10746760,23944997,16513748, </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 61: / Line 61: @@
 === Additional information===
 =The protein=
@@ Line 73: / Line 70: @@
 * '''Protein family:''' peptidase M20 family (according to Swiss-Prot)
-* '''Paralogous protein(s):''' [[SndA]], [[SndC]], [[YkuR]]
+* '''Paralogous protein(s):''' [[SndA]], [[SndC]], [[DapI]]
 === Extended information on the protein ===
@@ Line 79: / Line 76: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 108: / Line 105: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 sndB] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigA]] {{PubMed|16513748}}
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|16513748}}
 * '''Regulation:'''

← Older revision		Revision as of 12:05, 18 August 2013
Line 1:		Line 1:
−	* '''Description:''' sulphur compound N-deacetylase<br/><br/>	+	* '''Description:''' sulphur compound N-deacetylase, the ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' operon may be implicated in the utilization of a modified cysteine variant <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 4: / Line 4: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yxeP''
+|''sndB''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yxeP ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
@@ Line 106: / Line 106: @@
 * '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed|10746760}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 yxeP] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 sndB] {{PubMed|22383849}}
 * '''Sigma factor:''' [[SigA]] {{PubMed|16513748}}

@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 56: / Line 52: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 107: / Line 104: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yxeK]]-[[yxeL]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[yxeP]]-[[yxeQ]]'' {{PubMed|10746760}}
+* '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed|10746760}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 yxeP] {{PubMed|22383849}}

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to aminoacylase <br/><br/>
+* '''Description:''' sulphur compound N-deacetylase<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || sulphur compound N-deacetylase
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
@@ Line 141: / Line 141: @@
 =References=
-<pubmed>10746760,,16513748, </pubmed>
+<pubmed>10746760,23944997,16513748, </pubmed>
 [[Category:Protein-coding genes]]

← Older revision	Revision as of 11:37, 18 August 2013
(No difference)

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxeP_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeP_4056870_4058012_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxeP_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39470]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxeQ]]'', ''[[yxeO]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39470 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39470 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39470 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39470 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39470 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39470 DNA_with_flanks]
 |-
 |-