SnaA - Revision history

Jstuelk: /* Basic information/ Evolution */

2013-08-18T11:07:07Z

‎Basic information/ Evolution

Jstuelk at 11:05, 18 August 2013

2013-08-18T11:05:25Z

Jstuelk: Jstuelk moved page YtmI to SnaA: 23944997

2013-08-18T09:43:16Z

Jstuelk moved page YtmI to SnaA: 23944997

134.76.70.252 at 14:17, 16 May 2013

2013-05-16T14:17:54Z

134.76.70.252 at 11:00, 14 May 2013

2013-05-14T11:00:20Z

134.76.70.252 at 13:35, 13 May 2013

2013-05-13T13:35:52Z

134.76.70.252 at 14:54, 7 August 2012

2012-08-07T14:54:35Z

134.76.70.252 at 11:00, 20 April 2012

2012-04-20T11:00:19Z

134.76.70.252 at 15:15, 16 April 2012

2012-04-16T15:15:08Z

Jstuelk: /* References */

2010-12-19T19:49:57Z

‎References

@@ Line 76: / Line 76: @@
 * '''Protein family:''' acetyltransferase family (according to Swiss-Prot)
-* '''Paralogous protein(s):'''
+* '''Paralogous protein(s):''' [[SnaB]]
 === Extended information on the protein ===

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' sulphur N-acetylase, required for the conversion of S-methyl-cysteine to cysteine <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || sulphur N-acetylase
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of S-methyl-cysteine
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29390 ytmI]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29390 snaA]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/riboflavin.html Riboflavin / FAD]'''
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 534 bp, 178 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tcyJ]]'', ''[[ytlI]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tcyJ]]'', ''[[ascR]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29390 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29390 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29390 DNA_with_flanks]
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[sulfur metabolism]]}}
 = This gene is a member of the following [[regulons]] =
 {{SubtiWiki regulon|[[CymR regulon]]}},
-{{SubtiWiki regulon|[[YtlI regulon]]}}
+{{SubtiWiki regulon|[[AscR regulon]]}}
 =The gene=
@@ Line 57: / Line 53: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 74: / Line 72: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:''' acetyltransferase family (according to Swiss-Prot)
@@ Line 91: / Line 90: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 108: / Line 107: @@
 =Expression and regulation=
-* '''Operon:''' ''[[ytmI]]-[[tcyJ]]-[[tcyK]]-[[tcyL]]-[[tcyM]]-[[tcyN]]-[[ytmO]]-[[ytnI]]-[[ytnJ]]-[[ribR]]-[[ytnL]]-[[ytnM]]'' {{PubMed|15668000}}
+* '''Operon:''' ''[[snaA]]-[[tcyJ]]-[[tcyK]]-[[tcyL]]-[[tcyM]]-[[tcyN]]-[[cmoO]]-[[cmoI]]-[[cmoJ]]-[[ribR]]-[[sndA]]-[[ytnM]]'' {{PubMed|15668000}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytmI_3008249_3008785_-1 ytmI] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytmI_3008249_3008785_-1 snaA] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigA]] {{PubMed|15272571}}
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|15272571}}
 * '''Regulation:'''
 ** repressed in the presence of cysteine ([[CymR]]) {{PubMed|16109943}}
 * '''Regulatory mechanism:'''
 ** [[CymR]]: transcription repression {{PubMed|16109943}}
-** [[YtlI]]: transcription activation {{PubMed|16109943}}
+** [[AscR]]: transcription activation {{PubMed|16109943}}
 * '''Additional information:'''
@@ Line 143: / Line 143: @@
 =References=
-<pubmed>15937167,16109943,15668000,11390694 </pubmed>
+<pubmed>15937167,16109943,15668000,11390694 23944997</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytmI_3008249_3008785_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ytmI_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytmI_3008249_3008785_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ytmI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29390]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tcyJ]]'', ''[[ytlI]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29390 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29390 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29390 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29390 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29390 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29390 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ytmI_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU29390 ytmI]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29390 ytmI]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/riboflavin.html Riboflavin / FAD]'''
@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tcyJ]]'', ''[[ytlI]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14899&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29390 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29390 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29390 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ytmI_context.gif]]

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