SivC - Revision history

Jstuelk: /* Biological materials */

2015-07-21T08:03:09Z

‎Biological materials

Jstuelk at 18:53, 1 February 2015

2015-02-01T18:53:49Z

134.76.38.147 at 13:42, 2 April 2014

2014-04-02T13:42:35Z

134.76.70.252 at 13:20, 16 May 2013

2013-05-16T13:20:30Z

134.76.70.252 at 10:12, 14 May 2013

2013-05-14T10:12:51Z

134.76.70.252 at 12:49, 13 May 2013

2013-05-13T12:49:10Z

Jstuelk at 12:09, 1 February 2013

2013-02-01T12:09:54Z

Jstuelk at 12:08, 1 February 2013

2013-02-01T12:08:40Z

Jstuelk: moved YlqB to SivC: 23335417

2013-02-01T11:57:26Z

moved YlqB to SivC: 23335417

134.76.70.252 at 09:39, 7 August 2012

2012-08-07T09:39:20Z

@@ Line 120: / Line 120: @@
 =Biological materials =
-* '''Mutant:''' BKE15960 (''[[sivC]]''::''erm'', available in the BGSC and in [[Jörg Stülke]]'s lab)
+* '''Mutant:'''
 * '''Expression vector:'''

@@ Line 60: / Line 60: @@
 === Additional information===
 =The protein=
@@ Line 123: / Line 120: @@
 =Biological materials =
-* '''Mutant:'''
+* '''Mutant:''' BKE15960 (''[[sivC]]''::''erm'', available in the BGSC and in [[Jörg Stülke]]'s lab)
 * '''Expression vector:'''

@@ Line 53: / Line 53: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ylqB.html]
@@ Line 92: / Line 93: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylqB_1671166_1671651_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ylqB_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylqB_1671166_1671651_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ylqB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15960]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ftsY]]'', ''[[ylxM]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15960 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15960 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ylqB_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of entry into [[sporulation]] via the [[phosphorelay]]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15960 sivC]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15960 sivC]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 8.607
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ftsY]]'', ''[[ylxM]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13469&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15960 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ylqB_context.gif]]

← Older revision		Revision as of 12:09, 1 February 2013
Line 1:		Line 1:
−	* '''Description:''' inhibitor of [entry into [[sporulation]] via [[KinB]] or [[KinC]] <br/><br/>	+	* '''Description:''' inhibitor of entry into [[sporulation]] via [[KinB]] or [[KinC]] <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' inhibitor of [entry into [[sporulation]] via [[KinB]] or [[KinC]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || inhibitor of [entry into [[sporulation]]
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || control of entry into [[sporulation]] via the [[phosphorelay]]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15960 ylqB]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15960 sivC]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 8.607
@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[phosphorelay]]}}
 = This gene is a member of the following [[regulons]] =
@@ Line 72: / Line 68: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:'''
@@ Line 91: / Line 88: @@
 * '''[[SubtInteract|Interactions]]:'''
-* '''[[Localization]]:''' secreted (according to Swiss-Prot),  extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 107: / Line 105: @@
 =Expression and regulation=
-* '''Operon:''' ''ylqB'' {{PubMed|15033535}}
+* '''Operon:''' ''sivC'' {{PubMed|15033535}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylqB_1671166_1671651_-1 ylqB] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ylqB_1671166_1671651_-1 sivC] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigD]] {{PubMed|15033535}}
+* '''[[Sigma factor]]:''' [[SigD]] {{PubMed|15033535}}
 * '''Regulation:'''
@@ Line 141: / Line 139: @@
 =References=
-<pubmed>18957862 12107147, 15033535 18840696</pubmed>
+<pubmed>18957862 12107147, 15033535 18840696 23335417 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision	Revision as of 11:57, 1 February 2013
(No difference)