SigG - Revision history

Jstuelk: /* Original Publications */

2015-04-06T13:29:35Z

‎Original Publications

Jstuelk: /* Extended information on the protein */

2015-04-06T13:23:11Z

‎Extended information on the protein

Jstuelk: /* Extended information on the protein */

2015-04-06T13:12:45Z

‎Extended information on the protein

134.76.38.147 at 13:39, 2 April 2014

2014-04-02T13:39:54Z

Jstuelk at 17:45, 14 December 2013

2013-12-14T17:45:22Z

134.76.70.252 at 16:13, 11 November 2013

2013-11-11T16:13:26Z

Jstuelk at 20:03, 18 June 2013

2013-06-18T20:03:15Z

Jstuelk at 17:21, 24 May 2013

2013-05-24T17:21:48Z

134.76.70.252 at 13:17, 16 May 2013

2013-05-16T13:17:05Z

134.76.70.252 at 10:10, 14 May 2013

2013-05-14T10:10:04Z

← Older revision		Revision as of 13:29, 6 April 2015
Line 1:		Line 1:
−	* '''Description:~~''' [[RNA polymerase]] sporulation forespore-specific (late) [[sigma factor]]~~ SigG ~~<br/><br/>~~	+	{{#bank: SigG}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''sigG''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''spoIIIG ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[RNA polymerase]] sporulation forespore-specific <br/>(late) [[sigma factor]] SigG~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[transcription]] of sporulation genes (late forespore)~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15330 sigG]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SigG SigG]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 29 kDa, 5.496~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 780 bp, 260 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[sigE]]'', ''[[ylmA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15330 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15330 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15330 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:sigG_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sigG_1605630_1606412_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:sigG_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15330]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transcription]]}},~~
−	~~{{SubtiWiki category\|[[sigma factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[AbrB regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigF regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigG regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SinR regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[Spo0A regulon]]}}~~
−
−	~~=The [[SigG regulon]]=~~
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU15330
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15330&redirect=T BSU15330]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIGA-sigE-sigG.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10236]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' sigma-70 factor family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[SigF]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−	** [[Gin]] inhibits SigG activity [http://www.ncbi.nlm.nih.gov/sites/entrez/19497328 PubMed]
−	** the activity of [[SigG]]-containing [[RNA polymerase]] is modulated by [[YlyA]] {{PubMed\|23678950}}
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[SigG]]-[[RpoB]]-[[RpoC]]
−	** [[CsfB]]-[[SigG]] {{PubMed\|25835496,19497328}}
−	** [[SpoIIAB]]-[[SigG]] {{PubMed\|8885263}}
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15330&redirect=T BSU15330]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P19940 P19940]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15330]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−	** ''[[spoIIGA]]-[[sigE]]-[[sigG]]'' {{PubMed\|1902213}}
−	** ''[[sigG]]'' {{PubMed\|1902213}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sigG_1605630_1606412_1 sigG] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−	** ''[[spoIIGA]]'': [[SigA]] {{PubMed\|2512576}}
−	** ''[[sigG]]'': [[SigF]], [[SigG]] {{PubMed\|1902213}}
−
−	* '''Regulation:'''
−	** ''[[spoIIGA]]'': expressed under conditions that trigger sporulation ([[Spo0A]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8288522,15687200 PubMed]
−	** ''[[sigG]]'': expressed during sporulation ([[SigF]], [[SigG]]) {{PubMed\|1902213}}
−	** the mRNA accumulates in a ''[[ymdB]]'' mutant {{PubMed\|24163345}}
−
−	* '''Regulatory mechanism:'''
−	** repression by [[SinR]]
−	** [[Spo0A]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/8288522,15687200 PubMed]
−	** [[AbrB]]: transcription repression {{PubMed\|20817675}}
−
−	* '''Additional information:'''
−	** the mRNA half-life is about 2.6 min {{PubMed\|24163345}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Charles Moran]], Emory University, NC, USA [http://www.microbiology.emory.edu/moran_c.html homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed>20833318 </pubmed>~~
−	~~==The [[SigG regulon]]==~~
−	~~<pubmed>16497325</pubmed>~~
−	~~==Original Publications==~~
−	<pubmed>1900507,1902463,15175314,10806362,1902213,2497051,12867473,16707705,9829949,1487728,2448286, 9852018,19497328,8126438,8355618, 24163345 18820020,2493633, 7961403,15256570,12813085,9004507, 8885263, 18485064,19390092 23678950 22984259, 20817675,21935351 </pubmed>
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 98: / Line 98: @@
 * '''[[SubtInteract|Interactions]]:'''
 ** [[SigG]]-[[RpoB]]-[[RpoC]]
-** [[CsfB]]-[[SigG]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19497328 PubMed], [[SpoIIAB]]-[[SigG]] {{PubMed|8885263}}
+** [[CsfB]]-[[SigG]] {{PubMed|25835496,19497328}}
 * '''[[Localization]]:'''

@@ Line 98: / Line 98: @@
 * '''[[SubtInteract|Interactions]]:'''
 ** [[SigG]]-[[RpoB]]-[[RpoC]]
-** [[Gin]]-[[SigG]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19497328 PubMed], [[SpoIIAB]]-[[SigG]] {{PubMed|8885263}}
+** [[CsfB]]-[[SigG]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19497328 PubMed], [[SpoIIAB]]-[[SigG]] {{PubMed|8885263}}
 * '''[[Localization]]:'''

@@ Line 61: / Line 61: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIGA-sigE-sigG.html]
@@ Line 102: / Line 103: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 85: / Line 85: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 128: / Line 128: @@
 ** ''[[spoIIGA]]'': expressed under conditions that trigger sporulation ([[Spo0A]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8288522,15687200 PubMed]
 ** ''[[sigG]]'': expressed during sporulation ([[SigF]], [[SigG]]) {{PubMed|1902213}}
 * '''Regulatory mechanism:'''
@@ Line 135: / Line 136: @@
 * '''Additional information:'''
 =Biological materials =
@@ Line 162: / Line 164: @@
 <pubmed>16497325</pubmed>
 ==Original Publications==
-<pubmed>1900507,1902463,15175314,10806362,1902213,2497051,12867473,16707705,9829949,1487728,2448286,9852018,19497328,8126438,8355618, 18820020,2493633,7961403,15256570,12813085,9004507,8885263,18485064,19390092 23678950 22984259, 20817675,21935351 </pubmed>
+<pubmed>1900507,1902463,15175314,10806362,1902213,2497051,12867473,16707705,9829949,1487728,2448286, 9852018,19497328,8126438,8355618, 24163345 18820020,2493633, 7961403,15256570,12813085,9004507, 8885263, 18485064,19390092 23678950 22984259, 20817675,21935351 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15330 sigG]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SigG SigG]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SigG SigG]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 5.496

@@ Line 121: / Line 121: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sigG_1605630_1606412_1 sigG] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 ** ''[[spoIIGA]]'': [[SigA]] {{PubMed|2512576}}
 ** ''[[sigG]]'': [[SigF]], [[SigG]] {{PubMed|1902213}}
@@ Line 162: / Line 162: @@
 <pubmed>16497325</pubmed>
 ==Original Publications==
-<pubmed>1900507,1902463,15175314,10806362,1902213,2497051,12867473,16707705,9829949,1487728,2448286,9852018,19497328,8126438,8355618,18820020,2493633,7961403,15256570,12813085,9004507,8885263,18485064,19390092 23678950 22984259, 20817675,21935351 </pubmed>
+<pubmed>1900507,1902463,15175314,10806362,1902213,2497051,12867473,16707705,9829949,1487728,2448286,9852018,19497328,8126438,8355618, 18820020,2493633,7961403,15256570,12813085,9004507,8885263,18485064,19390092 23678950 22984259, 20817675,21935351 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sigG_1605630_1606412_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:sigG_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sigG_1605630_1606412_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:sigG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15330]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sigE]]'', ''[[ylmA]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15330 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15330 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15330 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15330 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15330 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15330 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:sigG_context.gif]]