SafA - Revision history

Jstuelk: /* Original publications */

2015-07-20T08:20:22Z

‎Original publications

Jstuelk: /* Original publications */

2014-09-29T09:31:40Z

‎Original publications

134.76.38.147 at 14:23, 2 April 2014

2014-04-02T14:23:25Z

Jstuelk at 18:35, 4 January 2014

2014-01-04T18:35:49Z

Jstuelk: /* Extended information on the protein */

2013-12-27T14:51:02Z

‎Extended information on the protein

Jstuelk at 14:47, 27 December 2013

2013-12-27T14:47:14Z

134.76.70.252 at 09:01, 12 November 2013

2013-11-12T09:01:00Z

Jstuelk: /* References */

2013-08-13T17:57:04Z

‎References

Jstuelk at 17:50, 13 August 2013

2013-08-13T17:50:50Z

Jstuelk at 10:34, 3 July 2013

2013-07-03T10:34:10Z

← Older revision		Revision as of 08:20, 20 July 2015
Line 1:		Line 1:
−	* '''Description:~~''' morphogenetic protein associated with [[SpoVID]], major organizer of the inner spore coat <br/><br/>~~	+	{{#bank: SafA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''safA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yrbA ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| morphogenetic protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| spore coat formation~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27840 safA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SafA SafA]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 43 kDa, 5.753~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1161 bp, 387 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[coxA]]'', ''[[nadA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU27840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU27840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU27840 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:safA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=safA_2844675_2845838_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:safA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27840]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}}~~
−
−	~~= SafA-dependent proteins of the inner spore coat =~~
−	* [[CotD]], [[CotP]], [[CotT]], [[CwlJ]], [[OxdD]], [[YaaH]], [[YeeK]], [[YisY]], [[YhjR]], [[YjqC]], [[YmaG]], [[YsnD]], [[YsxE]], [[YutH]], [[YuzC]], [[YxeE]], [[YybI]] {{PubMed\|22171814}}
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU27840
−
−	~~===Phenotypes of a mutant ===~~
−	* mis-assembly of the inner spore coat {{PubMed\|22171814}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU27840&redirect=T BSU27840]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/safA-coxA.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13781]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−	** contains a N-acetylglucosamine-polymer-binding [[LysM domain]] at the N-terminus {{PubMed\|18430080}}
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[SpoVID]]-[[SafA]] {{PubMed\|19702880,22262582}}
−	** [[SpoIVA]]-[[SafA]] {{PubMed\|19702880,22262582}}
−
−	* '''[[Localization]]:'''
−	** inner spore coat {{PubMed\|23202530}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU27840&redirect=T BSU27840]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O32062 O32062]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU27840]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[safA]]-[[coxA]]'' {{PubMed\|10438771}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=safA_2844675_2845838_-1 safA] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigE]] {{PubMed\|10438771}}
−
−	* '''Regulation:'''
−	** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed\|10438771}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** 1S126 ( ''safA''::''erm''), {{PubMed\|16751597}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S126&Search=1S126 BGSC]
−	** 1S117 ( ''safA''::''spec''), {{PubMed\| }}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S117&Search=1S117 BGSC]
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	* [[Adriano Henriques]], Lisbon, Portugal [http://www.itqb.unl.pt/research/biology/microbial-development homepage]
−	* [[Charles Moran]], Emory University, NC, USA [http://www.microbiology.emory.edu/moran_c.html homepage]
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews==~~
−	~~<pubmed>18430080 22192522 23202530</pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>10438771,16950916,11222602,11325931, 20451384,10714986, 22171814 22262582 23811766 25259857 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 152: / Line 152: @@
 <pubmed>18430080 22192522 23202530</pubmed>
 == Original publications ==
-<pubmed>10438771,16950916,11222602,11325931, 20451384,10714986, 22171814 22262582 23811766 </pubmed>
+<pubmed>10438771,16950916,11222602,11325931, 20451384,10714986, 22171814 22262582 23811766 25259857 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 58: / Line 58: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/safA-coxA.html]
@@ Line 97: / Line 98: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 93: / Line 93: @@
 ** [[SpoIVA]]-[[SafA]] {{PubMed|19702880,22262582}}
-* '''[[Localization]]:''' spore wall (according to Swiss-Prot)
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 147: / Line 148: @@
 =References=
 == Reviews==
-<pubmed>18430080 22192522 </pubmed>
+<pubmed>18430080 22192522 23202530</pubmed>
 == Original publications ==
 <pubmed>10438771,16950916,11222602,11325931, 20451384,10714986, 22171814 22262582 23811766 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 81: / Line 81: @@
 * '''[[Domains]]:'''
-** contains four N-acetylglucosamine-polymer-binding [[LysM domain]]s {{PubMed|18430080}}
+** contains a N-acetylglucosamine-polymer-binding [[LysM domain]] at the N-terminus {{PubMed|18430080}}
 * '''Modification:'''

@@ Line 80: / Line 80: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 112: / Line 113: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=safA_2844675_2845838_-1 safA] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigE]] {{PubMed|10438771}}
+* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|10438771}}
 * '''Regulation:'''
@@ Line 145: / Line 146: @@
 =References=
-== Reviews ==
+== Reviews==
-<pubmed> 22192522 </pubmed>
+<pubmed>18430080 22192522 </pubmed>
 == Original publications ==
 <pubmed>10438771,16950916,11222602,11325931, 20451384,10714986, 22171814 22262582 23811766 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU27840 safA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SafA SafA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SafA SafA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 5.753

@@ Line 44: / Line 44: @@
 = This gene is a member of the following [[regulons]] =
 {{SubtiWiki regulon|[[SigE regulon]]}}
 =The gene=