RpmGC - Revision history

Jstuelk at 16:46, 6 February 2015

2015-02-06T16:46:59Z

Jstuelk at 16:43, 6 February 2015

2015-02-06T16:43:09Z

Jstuelk at 15:57, 6 February 2015

2015-02-06T15:57:17Z

Jstuelk at 15:55, 6 February 2015

2015-02-06T15:55:05Z

Jstuelk at 15:54, 6 February 2015

2015-02-06T15:54:49Z

Jstuelk: /* References */

2015-02-05T16:42:30Z

‎References

Jstuelk at 16:41, 5 February 2015

2015-02-05T16:41:52Z

Jstuelk: Created page with "* '''Description:''' alternative ribosomal protein , replaces RpmG under conditions of zinc limitation

{| align="right" border="1" cellpadding="2" |- ..."

2015-02-05T16:41:30Z

Created page with "* '''Description:''' alternative ribosomal protein , replaces RpmG under conditions of zinc limitation {| align="right" border="1" cellpadding="2" |- ..."

New page

* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33|RpmG]] under conditions of zinc limitation 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ytiA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''S903''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || accessory [[ribosomal protein]]
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || translation
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30700 ytiA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YtiA YtiA]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' ||
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' ||
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqjL]]'', ''[[rnz]]''
|-
|colspan="2" | '''Genetic context''' [[Image:RpmGC.gif]]
<div align="right"> This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEB_3138978_3139226_-1 Expression at a glance]'''   {{PubMed|22383849}} [[Image:ytiA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30700]]
|-
|}

__TOC__
 
 
 
 

= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}}

= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[Zur regulon]]}}

=The gene=

=== Basic information ===

* '''Locus tag:''' none

===Phenotypes of a mutant ===

=== Database entries ===
* '''BsubCyc:'''

* '''DBTBS entry:''' no entry

* '''SubtiList entry:''' no entry

=== Additional information===

=The protein=

=== Basic information/ Evolution ===

* '''Catalyzed reaction/ biological activity:'''

* '''Protein family:'''

* '''Paralogous protein(s):''' [[RpmGA]], [[RpmGB]]

=== Extended information on the protein ===

* '''Kinetic information:'''

* '''Domains:'''

* '''Modification:'''

* '''Cofactor(s):'''

* '''Effectors of protein activity:'''

* '''[[SubtInteract|Interactions]]:'''

* '''[[Localization]]:'''

=== Database entries ===
* '''BsubCyc:'''

* '''Structure:'''

* '''UniProt:'''

* '''KEGG entry:'''

* '''E.C. number:'''

=== Additional information===

=Expression and regulation=

* '''Operon:''' ''[[rpmGC]]'' {{PubMed|22383849}}

* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=S903_2477758_2477958_-1 rpmGC] {{PubMed|22383849}}

* '''[[Sigma factor]]:'''

* '''Regulation:'''
** induced by zinc starvation ([[Zur]])

* '''Regulatory mechanism:'''
** [[Zur]]: transcription repression in the presence of zinc

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

* '''GFP fusion:'''

* '''two-hybrid system:'''

* '''Antibody:'''

=Labs working on this gene/protein=
* [[John Helmann]]

=Your additional remarks=

=References=
<pubmed> </pubmed>

[[Category:Protein-coding genes]]

← Older revision		Revision as of 16:46, 6 February 2015
Line 1:		Line 1:
−	* '''Description:~~''' alternative [[ribosomal protein]] , replaces [[RpmGA\|L33]] under conditions of zinc limitation, inactive pseudogene in 168 and NCIB3610 <br/><br/>~~	+	{{#bank: RpmGC}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''rpmGC''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''S903''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| accessory [[ribosomal protein]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| translation~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=S903 rpmGC]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\|~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\|~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yqjL]]'', ''[[rnz]]''~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:RpmGC.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEB_3138978_3139226_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:ytiA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30700]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[translation]]}},~~
−	~~{{SubtiWiki category\|[[pseudogenes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[Zur regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' none
−
−	~~===Phenotypes of a mutant ===~~
−	* the gene is an inactive pseudogene in ''B. subtilis'' 168, W23, and NCIB610 {{PubMed\|19648245}}
−	~~=== Database entries ===~~
−	* '''BsubCyc:'''
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' no entry
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):''' [[RpmGA]], [[RpmGB]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:'''
−
−	* '''Structure:'''
−
−	* '''UniProt:'''
−
−	* '''KEGG entry:'''
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[rpmGC]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=S903_2477758_2477958_-1 rpmGC] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** induced by zinc starvation ([[Zur]])
−
−	* '''Regulatory mechanism:'''
−	** [[Zur]]: transcription repression in the presence of zinc
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−	* [[John Helmann]]
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 19648245 </pubmed>~~
−
−	~~[[Category:Pseudogenes]]~~

@@ Line 1: / Line 1: @@
-* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33A|RpmGA]] under conditions of zinc limitation, inacxtive pseudogene in 168 and NCIB3610 <br/><br/>
+* '''Description:''' alternative [[ribosomal protein]] , replaces [[RpmGA|L33]] under conditions of zinc limitation, inactive pseudogene in 168 and NCIB3610 <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 51: / Line 51: @@
 ===Phenotypes of a mutant ===
+* the gene is an inactive pseudogene in ''B. subtilis'' 168, W23, and NCIB610 {{PubMed|19648245}}
 === Database entries ===
 * '''BsubCyc:'''

← Older revision		Revision as of 15:55, 6 February 2015
Line 1:		Line 1:
−	* '''Description:''' alternative [[ribosomal protein]] , replaces [[~~L33~~\|RpmGA]] under conditions of zinc limitation, inacxtive pseudogene in 168 and NCIB3610 <br/><br/>	+	* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33A\|RpmGA]] under conditions of zinc limitation, inacxtive pseudogene in 168 and NCIB3610 <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
-* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33|RpmGA]] under conditions of zinc limitation <br/><br/>
+* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33|RpmGA]] under conditions of zinc limitation, inacxtive pseudogene in 168 and NCIB3610 <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''ytiA''
+|''rpmGC''
 |-
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''S903''
@@ Line 38: / Line 38: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[translation]]}}
+{{SubtiWiki category|[[translation]]}},
 = This gene is a member of the following [[regulons]] =
@@ Line 138: / Line 139: @@
 <pubmed> 19648245 </pubmed>
-[[Category:Protein-coding genes]]
+[[Category:Pseudogenes]]

← Older revision		Revision as of 16:41, 5 February 2015
Line 1:		Line 1:
−	* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33\|~~RpmG~~]] under conditions of zinc limitation <br/><br/>	+	* '''Description:''' alternative [[ribosomal protein]] , replaces [[L33\|RpmGA]] under conditions of zinc limitation <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || translation
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30700 ytiA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=S903 rpmGC]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' ||

@@ Line 136: / Line 136: @@
 =References=
-<pubmed> </pubmed>
+<pubmed> 19648245 </pubmed>
 [[Category:Protein-coding genes]]