RpmGA - Revision history

Jstuelk: /* Extended information on the protein */

2015-02-06T16:01:40Z

‎Extended information on the protein

Jstuelk: /* Extended information on the protein */

2015-02-06T16:00:19Z

‎Extended information on the protein

Jstuelk: /* Basic information/ Evolution */

2015-02-06T15:59:28Z

‎Basic information/ Evolution

134.76.38.147 at 14:13, 2 April 2014

2014-04-02T14:13:31Z

Jstuelk at 17:24, 18 December 2013

2013-12-18T17:24:55Z

134.76.70.252 at 08:52, 12 November 2013

2013-11-12T08:52:05Z

Jstuelk at 10:37, 12 September 2013

2013-09-12T10:37:22Z

Jstuelk at 10:41, 19 June 2013

2013-06-19T10:41:50Z

134.76.70.252 at 13:55, 16 May 2013

2013-05-16T13:55:33Z

134.76.70.252 at 10:43, 14 May 2013

2013-05-14T10:43:49Z

← Older revision		Revision as of 16:01, 6 February 2015
Line 1:		Line 1:
−	* '''Description:~~''' [[ribosomal protein]] L33a <br/><br/>~~	+	{{#bank: RpmGA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''rpmGA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no {{PubMed\|23002217}}~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[ribosomal protein]] L33a~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[translation]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24900 rpmGA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RpmGA RpmGA]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 5 kDa, 10.436~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 147 bp, 49 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yqgN]]'', ''[[yqgM]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24900 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:rpmGA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmGA_2574408_2574557_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:rpmGA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24900]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[translation]]}},~~
−	~~{{SubtiWiki category\|[[phosphoproteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU24900
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU24900&redirect=T BSU24900]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14180]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' [[ribosomal protein]] L33P family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[RpmGB]], [[RpmGC]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−	** phosphorylated on Arg-29 {{PubMed\|22517742}}
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−	** requires zinc for activity {{PubMed\|19648245}}
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU24900&redirect=T BSU24900]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P56849 P56849]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU24900]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−	* the protein is significantly underrepresented in 45S assembly intermediates that accumulate upon depletion of [[RbgA]] {{PubMed\|24335279,23700310}}
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmGA_2574408_2574557_-1 rpmGA] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 19648245 22517742 23002217 24335279,23700310</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

← Older revision		Revision as of 16:00, 6 February 2015
Line 88:		Line 88:

	* '''Effectors of protein activity:'''		* '''Effectors of protein activity:'''
		+	** requires zinc for activity {{PubMed\|19648245}}

	* '''[[SubtInteract\|Interactions]]:'''		* '''[[SubtInteract\|Interactions]]:'''

@@ Line 74: / Line 74: @@
 * '''Protein family:''' [[ribosomal protein]] L33P family (according to Swiss-Prot)
-* '''Paralogous protein(s):''' [[RpmGB]], [[RpmGC/1|RpmGC]]
+* '''Paralogous protein(s):''' [[RpmGB]], [[RpmGC]]
 === Extended information on the protein ===

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 93: / Line 94: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 1: / Line 1: @@
-* '''Description:'''  [[ribosomal protein]]  <br/><br/>
+* '''Description:'''  [[ribosomal protein]] L33a <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 79: / Line 79: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
 ** phosphorylated on Arg-29 {{PubMed|22517742}}
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 103: / Line 103: @@
 === Additional information===
-* the protein is significantly underrepresented in 45S assembly intermediates that accumulate upon depletion of [[RbgA]] {{PubMed|23700310}}
+* the protein is significantly underrepresented in 45S assembly intermediates that accumulate upon depletion of [[RbgA]] {{PubMed|24335279,23700310}}
 =Expression and regulation=
@@ Line 138: / Line 138: @@
 =References=
-<pubmed> 19648245 22517742 23002217 23700310</pubmed>
+<pubmed> 19648245 22517742 23002217 24335279,23700310</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24900 rpmGA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RpmGA RpmGA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RpmGA RpmGA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 5 kDa, 10.436

@@ Line 110: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmGA_2574408_2574557_-1 rpmGA] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 137: / Line 137: @@
 =References=
-'''Additional publications:''' {{PubMed|23002217}}
+<pubmed> 19648245 22517742 23002217</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmGA_2574408_2574557_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rpmGA_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmGA_2574408_2574557_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rpmGA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24900]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqgN]]'', ''[[yqgM]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24900 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24900 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:rpmGA_context.gif]]