RpmE - Revision history

Jstuelk at 12:00, 11 February 2015

2015-02-11T12:00:10Z

Jstuelk at 11:59, 11 February 2015

2015-02-11T11:59:47Z

Jstuelk: /* Extended information on the protein */

2015-02-06T16:02:01Z

‎Extended information on the protein

134.76.38.147 at 15:03, 2 April 2014

2014-04-02T15:03:20Z

134.76.70.252 at 09:34, 12 November 2013

2013-11-12T09:34:04Z

Jstuelk at 10:44, 19 June 2013

2013-06-19T10:44:18Z

134.76.70.252 at 14:49, 16 May 2013

2013-05-16T14:49:12Z

134.76.70.252 at 11:31, 14 May 2013

2013-05-14T11:31:04Z

134.76.70.252 at 14:05, 13 May 2013

2013-05-13T14:05:39Z

Jstuelk at 10:51, 26 September 2012

2012-09-26T10:51:56Z

← Older revision		Revision as of 12:00, 11 February 2015
Line 1:		Line 1:
−	* '''Description:~~''' [[ribosomal protein]] <br/><br/>~~	+	{{#bank: RpmE}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''rpmE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no {{PubMed\|23002217}}~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[ribosomal protein]] L31~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[translation]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37070 rpmE]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RpmE RpmE]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 7 kDa, 9.157~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 198 bp, 66 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[tdk]]'', ''[[rho]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37070 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:rpmE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEA_3803081_3803281_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:rpmE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37070]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[translation]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[stringent response]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU37070
−
−	~~===Phenotypes of a mutant ===~~
−	* delayed spore [[germination]] {{PubMed\|25661487}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU37070&redirect=T BSU37070]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rpmE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10417]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' Type A subfamily (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[YtiA]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−	** requires zinc for activity {{PubMed\|19648245,15049826}}
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU37070&redirect=T BSU37070]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/Q03223 Q03223]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU37070]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~Under conditions of zinc starvation, RpmE is replaced by its paralog [[YtiA]], that does not require zinc {{PubMed\|15049826}}~~
−
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''rpmE'' {{PubMed\|9353933}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEA_3803081_3803281_-1 rpmE] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed\|11948165}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>17163968,15049826, 19648245 19653700 20208344 23002217 25661487</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 52: / Line 52: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 61: / Line 62: @@
 === Additional information===
 =The protein=
@@ Line 142: / Line 140: @@
 =References=
-<pubmed>17163968,15049826, 19648245 19653700 20208344 23002217</pubmed>
+<pubmed>17163968,15049826, 19648245 19653700 20208344 23002217 25661487</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 83: / Line 83: @@
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
-* '''Effectors of protein activity:''' Zn(2+) {{PubMed|15049826}}
+* '''Effectors of protein activity:'''
 * '''[[SubtInteract|Interactions]]:'''

@@ Line 54: / Line 54: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rpmE.html]
@@ Line 91: / Line 92: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37070 rpmE]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RpmE RpmE]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RpmE RpmE]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 9.157

@@ Line 111: / Line 111: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEA_3803081_3803281_-1 rpmE] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 139: / Line 139: @@
 =References=
-'''Additional publications:''' {{PubMed|23002217}}
+<pubmed>17163968,15049826, 19648245 19653700 20208344 23002217</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEA_3803081_3803281_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rpmE_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEA_3803081_3803281_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rpmE_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37070]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[tdk]]'', ''[[rho]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37070 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37070 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:rpmE_context.gif]]

@@ Line 8: / Line 8: @@
 |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+|style="background:#ABCDEF;" align="center"| '''Essential''' || no {{PubMed|23002217}}
 |-
 |style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] L31
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[translation]]}},
+{{SubtiWiki category|[[translation]]}}
 = This gene is a member of the following [[regulons]] =
@@ Line 57: / Line 52: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 146: / Line 139: @@
 =References=
+'''Additional publications:''' {{PubMed|23002217}}
 <pubmed>17163968,15049826, 19648245 19653700 20208344 </pubmed>
 [[Category:Protein-coding genes]]