RoxS - Revision history

Jstuelk at 12:37, 4 February 2015

2015-02-04T12:37:06Z

Jstuelk at 12:32, 4 February 2015

2015-02-04T12:32:49Z

Jstuelk at 12:11, 4 February 2015

2015-02-04T12:11:45Z

Jstuelk: /* This gene is a member of the following regulons */

2015-02-03T16:55:59Z

‎This gene is a member of the following regulons

Jstuelk: /* Expression and regulation */

2015-02-03T16:53:40Z

‎Expression and regulation

Jstuelk: /* Expression and regulation */

2015-02-03T16:52:47Z

‎Expression and regulation

Jstuelk: Created page with "* '''Description:''' small RNA

{| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''roxS'' |- |style="back..."

2015-02-03T16:29:15Z

Created page with "* '''Description:''' small RNA {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''roxS'' |- |style="back..."

New page

* '''Description:''' small RNA 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''roxS''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''rsaE ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' ||
|-
|style="background:#ABCDEF;" align="center"|'''Function''' ||
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yizD]]'', ''[[yjbH]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]'''
|-
|colspan="2" | '''Genetic context''' 
|-
|}

__TOC__

 

 
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[ncRNA]]}}

= This gene is a member of the following [[regulons]] =

=The gene=

=== Basic information ===

* '''Locus tag:'''

===Phenotypes of a mutant ===

=== Database entries ===
* '''BsubCyc:''' no entry

* '''DBTBS entry:''' no entry

* '''SubtiList entry:''' no entry

* '''Structure:'''

=== Additional information===

* '''Similar RNA:'''

* '''[[SubtInteract|Interactions]]:'''

=Expression and regulation=

* '''Operon:''' ''roxS''

* '''[[Sigma factor]]:'''

* '''Regulation:'''

* '''Regulatory mechanism:'''

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

=Labs working on this gene/RNA=

[[Ciaran Condon]], Paris

=Your additional remarks=

=References=

<pubmed> 25643072</pubmed>

[[Category:small RNA]]

@@ Line 96: / Line 96: @@
 * '''Additional information:'''
-** the roxS RNA is degraded by the joined activities of [[rny|RNase Y]] (initial endonucleolytic cleavage) and RNase J1 (processive degradation) {{PubMed|25643072}}
+** the roxS RNA is degraded by the joined activities of [[rny|RNase Y]] (initial endonucleolytic cleavage) and [[rnjA|RNase J1]] (processive degradation) {{PubMed|25643072}}
-** the roxS-ppnKB and roxS-sucC RNA duplexes form a cleavage site for RNase III {{PubMed|25643072}}
+** the ''[[roxS]]''-''[[ppnKB]]'' and ''[[roxS]]-[[sucC]]'' RNA duplexes form a cleavage site for [[rnc|RNase III]] {{PubMed|25643072}}
 =Biological materials =
 * '''Mutant:'''
+** available in [[Ciaran Condon]]'s lab {{PubMed|25643072}}
 * '''Expression vector:'''

@@ Line 35: / Line 35: @@
 {{SubtiWiki regulon|[[ResD regulon]]}}
 =The gene=
@@ Line 58: / Line 60: @@
 * '''[[SubtInteract|Interactions]]:'''
 =Expression and regulation=
@@ Line 72: / Line 96: @@
 * '''Additional information:'''
 =Biological materials =

@@ Line 1: / Line 1: @@
-* '''Description:''' small RNA<br/><br/>
+* '''Description:''' small RNA, controls expression of ''[[ppnKB]]'' and ''[[sucC]]-[[sucD]]''<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' ||
+|style="background:#ABCDEF;" align="center"| '''Product''' || trans-acting regulatory RNA
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' ||
+|style="background:#ABCDEF;" align="center"|'''Function''' || control of ''[[ppnKB]]'' and ''[[sucC]]-[[sucD]]'' expression
 |-
 |style="background:#ABCDEF;" align="center"| '''Gene length''' ||

@@ Line 61: / Line 61: @@
 =Expression and regulation=
-* '''Operon:''' ''roxS''
+* '''Operon:''' ''roxS''  {{PubMed|22383849}}
 * '''[[Sigma factor]]:'''

@@ Line 66: / Line 66: @@
 * '''Regulation:'''
 * '''Regulatory mechanism:'''
 * '''Additional information:'''
 =Biological materials =

RoxS - Revision history

Jstuelk at 12:37, 4 February 2015

Jstuelk at 12:32, 4 February 2015

Jstuelk at 12:11, 4 February 2015

Jstuelk: /* This gene is a member of the following regulons */

Jstuelk: /* Expression and regulation */

Jstuelk: /* Expression and regulation */

Jstuelk: Created page with "* '''Description:''' small RNA {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''roxS'' |- |style="back..."

Jstuelk: Created page with "* '''Description:''' small RNA

{| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''roxS'' |- |style="back..."