RecX - Revision history

134.76.38.147 at 13:14, 2 April 2014

2014-04-02T13:14:29Z

Jstuelk at 17:21, 29 November 2013

2013-11-29T17:21:35Z

Fabian Commichau: /* References */

2013-11-29T11:38:39Z

‎References

Jstuelk at 07:50, 5 June 2013

2013-06-05T07:50:15Z

134.76.70.252 at 12:48, 16 May 2013

2013-05-16T12:48:59Z

134.76.70.252 at 09:44, 14 May 2013

2013-05-14T09:44:57Z

134.76.70.252 at 12:23, 13 May 2013

2013-05-13T12:23:38Z

Jstuelk at 13:17, 4 January 2013

2013-01-04T13:17:01Z

Jstuelk at 13:05, 4 January 2013

2013-01-04T13:05:24Z

Jstuelk at 12:40, 4 January 2013

2013-01-04T12:40:20Z

← Older revision		Revision as of 13:14, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' recombination protein, modulates the SOS response and facilitates [[RecA]]-mediated recombinational repair and genetic recombination <br/><br/>	+	{{#bank: RecX}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''recX''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yfhG ''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| recombination protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[DNA repair/ recombination]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08520 recX]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 30 kDa, 6.292~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 792 bp, 264 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yfhF]]'', ''[[yfhH]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08520 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yfhG_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recX_925633_926427_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yfhG_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08520]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[DNA repair/ recombination]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU08520
−
−	~~===Phenotypes of a mutant ===~~
−	* reduced natural tranformation with plasmid or chromosomal DNA {{PubMed\|23284295}}
−	* drastically reduced survival of mature dormant spores after exposure to ultrahigh vacuum desiccation and ionizing radiation that induce single strand (ss) DNA nicks and double-strand breaks (DSBs) {{PubMed\|24285298}}
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfhGH.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12882]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** modulates the "length or packing" of a [[RecA]] filament, thereby [[RecX]] facilitates the initiation of recombination and increases recombination across species {{PubMed\|23284295}}
−	* '''Protein family:''' recX family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** forms foci on the nucleoid upon DNA damage {{PubMed\|23284295}}
−	** forms foci at the cells poles and/ or the nucleoid upon induction of genetic competence {{PubMed\|23284295}}
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31575 O31575]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU08520]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[recX]]-[[yfhH]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recX_925633_926427_1 yfhG] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>23284295 22383849 24285298 24285298</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 50: / Line 50: @@
 ===Phenotypes of a mutant ===
 * reduced natural tranformation with plasmid or chromosomal DNA {{PubMed|23284295}}
 === Database entries ===
@@ Line 133: / Line 134: @@
 =References=
-<pubmed>23284295 22383849 24285298 </pubmed>
+<pubmed>23284295 22383849 24285298 24285298</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 133: / Line 133: @@
 =References=
-<pubmed>23284295 22383849</pubmed>
+<pubmed>23284295 22383849 24285298 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 11: / Line 11: @@
 |style="background:#ABCDEF;" align="center"| '''Product''' || recombination protein
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA repair/recombination]]
+|style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA repair/ recombination]]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08520 recX]
@@ Line 106: / Line 106: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recX_925633_926427_1 yfhG] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recX_925633_926427_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yfhG_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recX_925633_926427_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yfhG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08520]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfhF]]'', ''[[yfhH]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08520 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08520 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yfhG_context.gif]]

@@ Line 37: / Line 37: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[DNA repair/recombination]]}}
+{{SubtiWiki category|[[DNA repair/ recombination]]}}
 = This gene is a member of the following [[regulons]] =
@@ Line 49: / Line 49: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 57: / Line 58: @@
 === Additional information===
@@ Line 66: / Line 65: @@
 * '''Catalyzed reaction/ biological activity:'''
+** modulates the "length or packing" of a [[RecA]] filament, thereby [[RecX]] facilitates the initiation of recombination and increases recombination across species {{PubMed|23284295}}
 * '''Protein family:''' recX family (according to Swiss-Prot)
@@ Line 86: / Line 85: @@
 * '''[[Localization]]:'''
-** cytoplasm (according to Swiss-Prot)
+** forms foci on the nucleoid upon DNA damage {{PubMed|23284295}}
 === Database entries ===

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' recombination protein, modulates the SOS response and facilitates [[RecA]]-mediated recombinational repair and genetic recombination <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 9: / Line 9: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || recombination protein
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA repair/recombination]]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU08520 recX]
@@ Line 37: / Line 37: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[DNA repair/recombination]]}}
 = This gene is a member of the following [[regulons]] =

@@ Line 3: / Line 3: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yfhG''
+|''recX''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yfhG ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU08520 yfhG]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU08520 recX]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 6.292
@@ Line 34: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 106: / Line 102: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yfhG]]-[[yfhH]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfhGH.html DBTBS])
+* '''Operon:''' ''[[recX]]-[[yfhH]]'' {{PubMed|22383849}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recX_925633_926427_1 yfhG] {{PubMed|22383849}}
@@ Line 137: / Line 133: @@
 =References=
+<pubmed>23284295 22383849</pubmed>
 [[Category:Protein-coding genes]]