RecR - Revision history

Jstuelk: /* Original publications */

2015-08-10T11:14:24Z

‎Original publications

Jstuelk: /* Original publications */

2015-08-10T11:11:34Z

‎Original publications

Jstuelk: /* Original publications */

2015-08-10T11:09:56Z

‎Original publications

Jstuelk at 11:20, 4 June 2014

2014-06-04T11:20:13Z

Jstuelk at 11:19, 4 June 2014

2014-06-04T11:19:23Z

Jstuelk at 11:19, 4 June 2014

2014-06-04T11:19:08Z

Jstuelk at 11:18, 4 June 2014

2014-06-04T11:18:32Z

134.76.38.147 at 12:45, 2 April 2014

2014-04-02T12:45:25Z

Jstuelk at 17:22, 29 November 2013

2013-11-29T17:22:13Z

Fabian Commichau: /* Original publications */

2013-11-29T11:38:01Z

‎Original publications

← Older revision		Revision as of 11:14, 10 August 2015
Line 1:		Line 1:
−	* '''Description:''' required for the formation of [[RecA]] DNA repair centers <br/><br/>	+	{{#bank: RecR}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''recR''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''recM ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| formation of [[RecA]] DNA repair centers~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[DNA repair/ recombination]]~~
−	\|-
−	~~\|colspan="2" style="background:~~#~~FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http~~:~~//subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00210 recR]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RecR ~~RecR]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 21 kDa, 5.301~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 594 bp, 198 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yaaK]]'', ''[[yaaL]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00210 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00210 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00210 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:recR_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recR_28867_29463_1 Expression at a glance]'''   {{PubMed\|22383849~~}~~}<br/>[[Image:recR_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00210]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[DNA repair/ recombination]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU00210
−
−	~~===Phenotypes of a mutant ===~~
−	* drastically reduced survival of mature dormant spores after exposure to ultrahigh vacuum desiccation and ionizing radiation that induce single strand (ss) DNA nicks and double-strand breaks (DSBs) {{PubMed\|24285298}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00210&redirect=T BSU00210]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10085]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** required for the formation of [[RecA]] DNA repair centers (together with [[RecO]]) {{PubMed\|24891441}}
−
−	* '''Protein family:''' recR family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[RecR]]-[[RecO]], [[RecR]]:[[RecO]] molecular ratio of 2:1 (as judged from other bacteria such as ''E. coli'' and ''Deinococcus radiodurans'') {{PubMed\|17581636}}
−
−	* '''[[Localization]]:'''
−	** cytoplasm (homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00210&redirect=T BSU00210]
−
−	* '''Structure:'''
−	** [http://www.rcsb.org/pdb/explore/explore.do?structureId=2V1C 2V1C] (the [[RecR]]-[[RecO]] complex from ''Deinococcus radiodurans'', [[RecR]]: 52% identity, 78% similarity, [[RecO]]: 30%/ 58%) {{PubMed\|17581636}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P24277 P24277]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00210]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recR_28867_29463_1 recR] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:''' the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 22933559 </pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441 9157236 9108290</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 141: / Line 141: @@
 <pubmed> 22933559 </pubmed>
 == Original publications ==
-<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441     9108290</pubmed>
+<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441 9157236 9108290</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 141: / Line 141: @@
 <pubmed> 22933559 </pubmed>
 == Original publications ==
-<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441</pubmed>
+<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441     9108290</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 1: / Line 1: @@
-* '''Description:''' required for the formation of [[RecA]] DNA repair centers
+* '''Description:''' required for the formation of [[RecA]] DNA repair centers <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-

@@ Line 1: / Line 1: @@
 * '''Description:''' required for the formation of [[RecA]] DNA repair centers
 <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-

@@ Line 1: / Line 1: @@
-* '''Description:''' repair, recombination <br/><br/>
+* '''Description:''' required for the formation of [[RecA]] DNA repair centers
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 11: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || formation of [[RecA]] DNA repair centers
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA repair/ recombination]]
@@ Line 62: / Line 63: @@
 === Additional information===
 =The protein=
@@ Line 71: / Line 69: @@
 * '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:''' recR family (according to Swiss-Prot)
@@ Line 144: / Line 143: @@
 <pubmed> 22933559 </pubmed>
 == Original publications ==
-<pubmed>12884008,17581636, 16479537 24285298 24285298</pubmed>
+<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 94: / Line 95: @@
 === Database entries ===
 * '''Structure:'''