PhrH - Revision history

134.76.38.147 at 13:09, 2 April 2014

2014-04-02T13:09:15Z

134.76.70.252 at 14:14, 18 November 2013

2013-11-18T14:14:53Z

134.76.70.252 at 12:43, 16 May 2013

2013-05-16T12:43:42Z

134.76.70.252 at 12:18, 13 May 2013

2013-05-13T12:18:36Z

Awiechert at 07:43, 13 November 2012

2012-11-13T07:43:39Z

Raphael2215 at 08:38, 13 August 2012

2012-08-13T08:38:55Z

134.76.70.252 at 08:11, 9 August 2012

2012-08-09T08:11:36Z

134.76.70.252 at 15:44, 6 August 2012

2012-08-06T15:44:54Z

Jstuelk: /* Expression and regulation */

2011-09-16T19:04:30Z

‎Expression and regulation

Jstuelk: /* References */

2011-09-16T18:25:04Z

‎References

← Older revision		Revision as of 13:09, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' secreted regulator of the activity of phosphatase [[RapH]] <br/><br/>	+	{{#bank: PhrH}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''phrH''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| secreted regulator of the activity of phosphatase [[RapH]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of sporulation initiation~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06839 phrH]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=PhrH PhrH]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 6.3 kDa, 9.518~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 171 bp, 57 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[rapH]]'', ''[[yeeI]]''~~
−	\|-
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/genE_nucleotide.txt Gene sequence (+200bp) ]'''~~
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/genE_protein.txt Protein sequence]'''~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:phrH_context.gif]]~~
−	\|-
−	~~\|colspan="2" \|'''[None Expression at a glance]'''   {{PubMed\|22383849~~}~~}<br/>[[Image:phrH_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06839]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[phosphorelay]]}},~~
−	~~{{SubtiWiki category\|[[quorum sensing]]}},~~
−	~~{{SubtiWiki category\|[[short peptides]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[RghR regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU06839
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' no entry
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[RapH]]-[[PhrH]] {{PubMed\|21908671}}
−
−	* '''[[Localization]]:'''
−	** secreted as hexapeptide TDRNTT {{PubMed\|21908671}}, uptake by the ([[OppD]]-[[OppF]])-([[OppB]]-[[OppC]])-[[OppA]] [[ABC transporter]] {{PubMed\|21908671}}
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/Q59HN7 Q59HN7]
−
−	* '''KEGG entry:'''
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−	** ''[[rapH]]-[[phrH]]'' {{PubMed\|21908671}}
−	** ''[[phrH]]'' {{PubMed\|21908671}}
−
−	* '''[[Sigma factor]]:'''
−	** ''[[rapH]]'': [[SigA]] {{PubMed\|21908671}}
−	** ''[[phrH]]'': [[SigA]] {{PubMed\|21908671}}
−
−	* '''Regulation:'''
−	** ''[[rapH]]'': repressed by [[RghR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
−
−	* '''Regulatory mechanism:'''
−	** [[RghR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~'''Additional publikations:''' {{PubMed\|21908671}}~~
−	~~<pubmed>16553878 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 15: / Line 15: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06839 phrH]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/PhrH PhrH]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=PhrH PhrH]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 6.3 kDa, 9.518

@@ Line 28: / Line 28: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:phrH_context.gif]]
 |-
-|colspan="2" |'''[None Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:phrH_expression.png|500px]]
+|colspan="2" |'''[None Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:phrH_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06839]]
 |-
 |}

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of sporulation initiation
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU06839 phrH]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06839 phrH]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/PhrH PhrH]

@@ Line 17: / Line 17: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/PhrH PhrH]
 |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' ||
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 6.3 kDa, 9.518
 |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' ||
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 171 bp, 57 aa
 |-
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rapH]]'', ''[[yeeI]]''
@@ Line 54: / Line 54: @@
 === Basic information ===
-* '''Locus tag:'''
+* '''Locus tag:''' BSU06839
 ===Phenotypes of a mutant ===

@@ Line 1: / Line 1: @@
+* '''Description:''' secreted regulator of the activity of phosphatase [[RapH]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-

@@ Line 108: / Line 108: @@
 * '''Regulation:'''
-** repressed by [[RghR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
+** ''[[rapH]]'': repressed by [[RghR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
 * '''Regulatory mechanism:'''
 ** [[RghR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
 * '''Additional information:'''
 =Biological materials =

@@ Line 135: / Line 135: @@
 =References=
 '''Additional publikations:''' {{PubMed|21908671}}
-<pubmed>16553878, 21908671 </pubmed>
+<pubmed>16553878 </pubmed>
 [[Category:Protein-coding genes]]