NasE - Revision history

Jstuelk: /* References */

2015-07-30T08:24:31Z

‎References

Jstuelk: /* Original publications */

2014-05-26T15:49:34Z

‎Original publications

134.76.38.147 at 12:57, 2 April 2014

2014-04-02T12:57:11Z

Jstuelk: /* Extended information on the protein */

2014-03-19T15:31:39Z

‎Extended information on the protein

Jstuelk at 15:29, 19 March 2014

2014-03-19T15:29:58Z

Jstuelk: /* Expression and regulation */

2014-03-19T15:25:16Z

‎Expression and regulation

Jstuelk: /* Reviews */

2014-03-19T13:16:07Z

‎Reviews

134.76.70.252 at 10:07, 7 January 2014

2014-01-07T10:07:31Z

134.76.70.252 at 15:09, 11 November 2013

2013-11-11T15:09:48Z

134.76.70.252 at 12:30, 16 May 2013

2013-05-16T12:30:51Z

← Older revision		Revision as of 08:24, 30 July 2015
Line 1:		Line 1:
−	* '''Description:~~''' assimilatory nitrite reductase (subunit) <br/><br/>~~	+	{{#bank: NasE}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''nasE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''nasBD, nirD ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| assimilatory nitrite reductase (subunit)~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| utilization of nitrite as nitrogen source~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03290 nasE]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=NasE NasE]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=nasE nasE]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 11 kDa, 4.805~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 318 bp, 106 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[nasF]]'', ''[[nasD]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03290 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03290 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03290 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:nasE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasE_355412_355732_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:nasE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03290]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[respiration]]}},~~
−	~~{{SubtiWiki category\|[[utilization of nitrogen sources other than amino acids]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[Fur regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[NsrR regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[ResD regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[TnrA regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU03290
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU03290&redirect=T BSU03290]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nasBCDEF.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11097]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' Ammonium hydroxide + 3 NAD(P)<sup>+</sup> + H<sub>2</sub>O = nitrite + 3 NAD(P)H (according to Swiss-Prot)
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−	** NAD {{PubMed\|11289299}}
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:''' [[NasD]]-[[NasE]] {{PubMed\|11289299}}
−
−	* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU03290&redirect=T BSU03290]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P42436 P42436]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU03290]
−
−	* '''E.C. number:''' [http://www.expasy.org/enzyme/1.7.1.4 1.7.1.4]
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−	** ''[[nasB]]-[[nasC]]-[[nasD]]-[[nasE]]-[[nasF]]'' {{PubMed\|7836289}}
−	** ''[[nasD]]-[[nasE]]-[[nasF]]'' {{PubMed\|9765565}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasE_355412_355732_-1 nasE] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|7836289}}
−
−	* '''Regulation:'''
−	** expressed in the absence of good nitrogen sources (glutamine or ammonium) ([[TnrA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8799114,9765565 PubMed]
−	** ''[[nasD]]'': expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10972836 PubMed]
−	** induced by nitric oxide under anaerobic conditions ([[NsrR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16885456 PubMed]
−	** induced by iron starvation ([[Fur]]) {{PubMed\|12354229}}
−
−	* '''Regulatory mechanism:'''
−	** [[TnrA]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/8799114,9765565 PubMed]
−	** [[ResD]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/10972836 PubMed]
−	** [[NsrR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16885456 PubMed]
−	** [[Fur]]: transcription repression {{PubMed\|12354229}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed> 22103536 11289299 </pubmed>~~
−
−	~~==Original publications==~~
−	~~<pubmed>12823818,7868621 ,8799114,9765565,10972836,16885456, 21091510 24214949 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 155: / Line 155: @@
 ==Original publications==
-<pubmed>12823818,7868621 ,8799114,9765565,10972836,16885456, 21091510</pubmed>
+<pubmed>12823818,7868621 ,8799114,9765565,10972836,16885456, 21091510 24214949 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 60: / Line 60: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nasBCDEF.html]
@@ Line 95: / Line 96: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 90: / Line 90: @@
 * '''Effectors of protein activity:'''
-* '''[[SubtInteract|Interactions]]:''' [[NasD]]-[[NasE]]
+* '''[[SubtInteract|Interactions]]:''' [[NasD]]-[[NasE]]  {{PubMed|11289299}}
 * '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)

@@ Line 39: / Line 39: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 70: / Line 66: @@
 === Additional information===
 =The protein=
@@ Line 88: / Line 81: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 120: / Line 114: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasE_355412_355732_-1 nasE] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigA]] {{PubMed|7836289}}
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|7836289}}
 * '''Regulation:'''

@@ Line 114: / Line 114: @@
 =Expression and regulation=
-* '''Operon:''' ''[[nasB]]-[[nasC]]-[[nasD]]-[[nasE]]-[[nasF]]'' {{PubMed|7836289}}
+* '''Operon:'''
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasE_355412_355732_-1 nasE] {{PubMed|22383849}}
@@ Line 122: / Line 124: @@
 * '''Regulation:'''
 ** expressed in the absence of good nitrogen sources (glutamine or ammonium) ([[TnrA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8799114,9765565 PubMed]
-** expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10972836 PubMed]
+** ''[[nasD]]'': expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10972836 PubMed]
 ** induced by nitric oxide under anaerobic conditions ([[NsrR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16885456 PubMed]
 ** induced by iron starvation ([[Fur]]) {{PubMed|12354229}}

@@ Line 154: / Line 154: @@
 =References=
 ==Reviews==
-<pubmed> 22103536 </pubmed>
+<pubmed> 22103536 11289299 </pubmed>
 ==Original publications==
 <pubmed>12823818,7868621 ,8799114,9765565,10972836,16885456, 21091510</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 18: / Line 18: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=NasE NasE]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Alternative nitrogen sources]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=nasE nasE]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 4.805

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03290 nasE]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/NasE NasE]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=NasE NasE]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Alternative nitrogen sources]'''

@@ Line 31: / Line 31: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasE_355412_355732_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:nasE_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasE_355412_355732_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:nasE_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03290]]
 |-
 |}