MraZ - Revision history

134.76.38.147 at 13:38, 2 April 2014

2014-04-02T13:38:41Z

134.76.70.252 at 13:13, 16 May 2013

2013-05-16T13:13:46Z

134.76.70.252 at 10:08, 14 May 2013

2013-05-14T10:08:29Z

134.76.70.252 at 12:45, 13 May 2013

2013-05-13T12:45:24Z

134.76.70.252 at 09:29, 19 September 2012

2012-09-19T09:29:05Z

134.76.70.252 at 09:21, 7 August 2012

2012-08-07T09:21:44Z

Jstuelk at 12:59, 14 July 2012

2012-07-14T12:59:32Z

134.76.70.252 at 08:55, 19 April 2012

2012-04-19T08:55:55Z

134.76.70.252 at 08:24, 13 April 2012

2012-04-13T08:24:08Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-01-28T08:50:43Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

← Older revision		Revision as of 13:38, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' Putative DNA-binding protein <br/><br/>~~	+	{{#bank: MraZ}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''mraZ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yllB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15130 mraZ]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 16 kDa, 4.969~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 429 bp, 143 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[bshC]]'', ''[[mraW]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15130 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15130 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15130 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yllB_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mraZ_1580121_1580552_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:mraZ_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15130]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[proteins of unknown function]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU15130
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yllB-ylxA-ftsL-pbpB.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11425]
−
−	~~=== Additional information===~~
−	~~the ''E.coli'' homolog: [http://ecoliwiki.net/colipedia/index.php/mraZ ''mraZ'']~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' mraZ family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** nucleoid (heterogeneous) {{PubMed\|16479537}}
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?pdbId=1n0g 1N0G] (the homolog from ''Mycoplasma pneumoniae'') {{PubMed\|15146477}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P55343 P55343]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15130]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[mraZ]]-[[mraW]]-[[ftsL]]-[[pbpB]]'' {{PubMed\|8636036,8244929}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mraZ_1580121_1580552_1 mraZ] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** 1A817 ( ''mraZ''::''erm''), {{PubMed\|12682299}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A817&Search=1A817 BGSC]
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>8636036,16479537 ,8244929 16511046 15146477 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mraZ_1580121_1580552_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:mraZ_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mraZ_1580121_1580552_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:mraZ_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15130]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bshC]]'', ''[[mraW]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15130 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15130 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15130 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15130 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15130 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15130 DNA_with_flanks]
 |-
 |-

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU15130 mraZ]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15130 mraZ]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 4.969
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bshC]]'', ''[[mraW]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13386&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15130 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15130 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15130 Advanced_DNA]
 |-
 |-

← Older revision		Revision as of 09:29, 19 September 2012
Line 122:		Line 122:

	* '''Mutant:'''		* '''Mutant:'''
		+	** 1A817 ( ''mraZ''::''erm''), {{PubMed\|12682299}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A817&Search=1A817 BGSC]

	* '''Expression vector:'''		* '''Expression vector:'''

@@ Line 93: / Line 93: @@
 === Database entries ===
-* '''Structure:'''
+* '''Structure:'''	[http://www.rcsb.org/pdb/explore/explore.do?pdbId=1n0g 1N0G] (the homolog from ''Mycoplasma pneumoniae'') {{PubMed|15146477}}
 * '''UniProt:''' [http://www.uniprot.org/uniprot/P55343 P55343]
@@ Line 137: / Line 137: @@
 =References=
-<pubmed>8636036,16479537 ,8244929 16511046 </pubmed>
+<pubmed>8636036,16479537 ,8244929 16511046 15146477 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 26: / Line 26: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:yllB_context.gif]]
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
 __TOC__
 <br/><br/>

@@ Line 99: / Line 99: @@
 * '''Operon:''' ''[[mraZ]]-[[mraW]]-[[ftsL]]-[[pbpB]]'' {{PubMed|8636036,8244929}}
-* '''[[Sigma factor]]:'''
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mraZ_1580121_1580552_1 mraZ] {{PubMed|22383849}}
 * '''Regulation:'''

← Older revision		Revision as of 08:50, 28 January 2012
Line 44:		Line 44:

	* '''Locus tag:''' BSU15130		* '''Locus tag:''' BSU15130
−
−	~~[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=mraZ_1580121_1580552_1 Expression]~~

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===