LutR - Revision history

Jstuelk at 09:04, 18 July 2014

2014-07-18T09:04:51Z

Jstuelk at 09:03, 18 July 2014

2014-07-18T09:03:07Z

Jstuelk at 17:51, 11 June 2014

2014-06-11T17:51:11Z

134.76.38.147 at 14:48, 2 April 2014

2014-04-02T14:48:37Z

134.76.70.252 at 11:42, 7 January 2014

2014-01-07T11:42:28Z

Atkovacs: /* Biological materials */

2013-11-08T10:42:18Z

‎Biological materials

Atkovacs: /* Biological materials */

2013-11-08T10:41:53Z

‎Biological materials

Atkovacs: /* Biological materials */

2013-11-08T10:41:05Z

‎Biological materials

Atkovacs: /* Biological materials */

2013-11-08T10:39:30Z

‎Biological materials

Atkovacs: /* Biological materials */

2013-11-08T10:38:25Z

‎Biological materials

← Older revision		Revision as of 09:04, 18 July 2014
Line 1:		Line 1:
−	* '''Description:~~''' transcriptional repressor ([[GntR family]]) of the ''[[lutA]]-[[lutB]]-[[lutC]]'' operon <br/><br/>~~	+	{{#bank: LutR}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''lutR''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yvfI ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| transcriptional repressor, ([[GntR family]])~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of lactate utilization~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU34180 lutR]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=lutR lutR]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 19 kDa, 4.845~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 525 bp, 175 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[lacR]]'', ''[[lutP]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34180 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34180 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34180 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yvfI_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvfI_3509831_3510490_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:lutR_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU34180]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[utilization of specific carbon sources]]}},~~
−	~~{{SubtiWiki category\|[[transcription factors and their control]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−	~~=The [[LutR regulon]]:=~~
−	* ''[[lutA]]-[[lutB]]-[[lutC]]''
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU34180
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU34180&redirect=T BSU34180]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12434]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' transcriptional repressor of the'' [[lutA]]-[[lutB]]-[[lutC]]'' operon [http://www.ncbi.nlm.nih.gov/sites/entrez/19201793 PubMed]
−
−	* '''Protein family:''' [[GntR family]] of transcription factors
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:''' lactate acts as molecular inducer [http://www.ncbi.nlm.nih.gov/sites/entrez/19201793 PubMed]
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU34180&redirect=T BSU34180]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O07007 O07007]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU34180]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvfI_3509831_3510490_-1 lutR] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|25031425}}
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:''' TEK1 lutR::Tn10::spc [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]
−
−	* '''Expression vector:''' pQE60-lutR (His-tag) [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]
−
−	* '''lacZ fusion:''' TEK7 lutR::lacZ::erm [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Richard Losick]], Harvard Univ., Cambridge, USA [http://www.mcb.harvard.edu/Losick/ homepage]~~
−
−	~~[[Ayten Katatas]], Istanbul Technical University, Istanbul, Turkey [http://www.bio.itu.edu.tr/personel_data/personel_ayten_yazgan_karatas.htm]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed> 24196425, 19201793 25031425 18604637</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 110: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvfI_3509831_3510490_-1 lutR] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|25031425}}
 * '''Regulation:'''
@@ Line 142: / Line 142: @@
 =References=
-<pubmed> 24196425, 19201793 </pubmed>
+<pubmed> 24196425, 19201793 25031425 18604637</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 1: / Line 1: @@
-* '''Description:''' repressor of the ''[[lutA]]-[[lutB]]-[[lutC]]'' operon <br/><br/>
+* '''Description:''' transcriptional repressor ([[GntR family]]) of the ''[[lutA]]-[[lutB]]-[[lutC]]'' operon <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 68: / Line 64: @@
 === Additional information===
 =The protein=

@@ Line 61: / Line 61: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 98: / Line 99: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU34180 lutR]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=lutR lutR]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 19 kDa, 4.845

@@ Line 127: / Line 127: @@
 * '''Mutant:''' TEK1 lutR::Tn10::spc [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]
-* '''Expression vector:''' pQE60-lutR (His-tag) [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMe
+* '''Expression vector:''' pQE60-lutR (His-tag) [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]
 * '''lacZ fusion:''' TEK7 lutR::lacZ::erm [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]

@@ Line 125: / Line 125: @@
 =Biological materials =
-* '''Mutant:''' [[lutR::Tn10::spc]]
+* '''Mutant:''' lutR::Tn10::spc [http://www.ncbi.nlm.nih.gov/sites/entrez/24196425 PubMed]
 * '''Expression vector:'''