LtaS - Revision history

Jstuelk at 15:45, 9 October 2014

2014-10-09T15:45:31Z

Jstuelk: /* Reviews */

2014-06-19T11:30:47Z

‎Reviews

Jstuelk: /* References */

2014-06-19T11:25:22Z

‎References

134.76.38.147 at 13:12, 2 April 2014

2014-04-02T13:12:00Z

134.76.70.252 at 10:20, 7 January 2014

2014-01-07T10:20:25Z

Jstuelk: /* References */

2013-08-13T18:05:53Z

‎References

Fmehne: /* Biological materials */

2013-08-13T16:12:23Z

‎Biological materials

Fmehne: /* Biological materials */

2013-08-13T16:02:54Z

‎Biological materials

134.76.70.252 at 12:46, 16 May 2013

2013-05-16T12:46:33Z

134.76.70.252 at 09:42, 14 May 2013

2013-05-14T09:42:30Z

← Older revision		Revision as of 15:45, 9 October 2014
Line 1:		Line 1:
−	* '''Description:''' polyglycerolphosphate lipoteichoic acid synthase<br/><br/>	+	{{#bank: LtaS}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ltaS''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yflE''~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| major lipoteichoic acid synthase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| biosynthesis of lipoteichoic acid~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07710 ltaS]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=ltaS ltaS]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 74 kDa, 5.202~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1947 bp, 649 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[nagP]]'', ''[[yflD]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07710 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07710 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07710 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yflE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/index.py?detailname=&locustag=BSU07710 Expression at a glance]'''   {{PubMed\|22383849~~}~~}<br/>[[Image:ltaS_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07710]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[cell wall synthesis]]}},~~
−	~~{{SubtiWiki category\|[[biosynthesis of cell wall components]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[phosphoproteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:'''
−
−	~~===Phenotypes of a mutant ===~~
−	* induction of [[SigM]] and [[SigX]] activities {{PubMed\|23103977}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07710&redirect=T BSU07710]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yflE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12940]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' LTA synthase family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[YfnI]], [[YqgS]], [[YvgJ]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:''' phosphorylated on Thr-297 {{PubMed\|19229300}}
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** cell membrane, at the septum of the cell {{PubMed\|15743965}}
−	** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07710&redirect=T BSU07710]
−
−	* '''Structure:''' [http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?Dopt=s&uid=69910&ordinalpos=1&log$=structuread_title 2W8D]
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O34952 O34952]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU07710]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''ltaS'' (according to [http://dbtbs.hgc.jp/COG/prom/yflE.html DBTBS])
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** GP1389 ''ltaS::aphA3'', available in [[Jörg Stülke]]'s lab
−	** GP1396 ''ltaS::tet'', available in [[Jörg Stülke]]'s lab
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed> 21388439 21255102 24819367 </pubmed>~~
−
−	~~==Original publications==~~
−	~~<pubmed>19229300,17483484 21255105, 19168632 15743965 23103977 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 143: / Line 143: @@
 =References=
 ==Reviews==
-<pubmed> 21388439 21255102 24024634 </pubmed>
+<pubmed> 21388439 21255102 24819367 </pubmed>
 ==Original publications==
 <pubmed>19229300,17483484 21255105, 19168632 15743965 23103977 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 143: / Line 143: @@
 =References=
 ==Reviews==
-<pubmed> 21388439 21255102</pubmed>
+<pubmed> 21388439 21255102 24024634 </pubmed>
 ==Original publications==
 <pubmed>19229300,17483484 21255105, 19168632 15743965 23103977 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 57: / Line 57: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yflE.html]
@@ Line 96: / Line 97: @@
 === Database entries ===
 * '''Structure:''' [http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?Dopt=s&uid=69910&ordinalpos=1&log$=structuread_title 2W8D]

@@ Line 15: / Line 15: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07710 ltaS]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html Lipid synthesis]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=ltaS ltaS]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 74 kDa, 5.202

@@ Line 123: / Line 123: @@
 * '''Mutant:'''
 ** GP1389 ''ltaS::aphA3'', available in [[Jörg Stülke]]'s lab
 * '''Expression vector:'''

← Older revision		Revision as of 16:02, 13 August 2013
Line 122:		Line 122:

	* '''Mutant:'''		* '''Mutant:'''
		+	** GP1389 ''ltaS::aphA3'', available in [[Jörg Stülke]]'s lab

	* '''Expression vector:'''		* '''Expression vector:'''

@@ Line 28: / Line 28: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/index.py?detailname=&locustag=BSU07710 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ltaS_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/index.py?detailname=&locustag=BSU07710 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ltaS_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07710]]
 |-
 |}

@@ Line 23: / Line 23: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nagP]]'', ''[[yflD]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07710 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07710 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07710 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07710 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07710 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07710 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yflE_context.gif]]