ImmR - Revision history

Jstuelk: /* References */

2014-07-07T08:28:38Z

‎References

Jstuelk: /* Basic information/ Evolution */

2014-06-11T17:06:05Z

‎Basic information/ Evolution

Jstuelk at 16:54, 7 June 2014

2014-06-07T16:54:46Z

134.76.70.252 at 09:24, 17 April 2014

2014-04-17T09:24:06Z

134.76.38.147 at 13:03, 2 April 2014

2014-04-02T13:03:06Z

Jstuelk at 08:59, 19 February 2014

2014-02-19T08:59:57Z

Jstuelk at 08:36, 19 February 2014

2014-02-19T08:36:17Z

134.76.70.252 at 14:14, 18 November 2013

2013-11-18T14:14:13Z

134.76.70.252 at 12:37, 16 May 2013

2013-05-16T12:37:22Z

134.76.70.252 at 09:32, 14 May 2013

2013-05-14T09:32:49Z

← Older revision		Revision as of 08:28, 7 July 2014
Line 1:		Line 1:
−	* '''Description:''' transcriptional repressor ([[transcription factors of the Xre family\|Xre family]]), controls expression of genes of the mobile genetic element ICEBs1, induction by the SOS response or the [[RapI]]-[[PhrI]] sensory system <br/><br/>	+	{{#bank: ImmR}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''immR''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ydcN''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| transcriptional repressor ([[transcription factors of the Xre family\|Xre family]])~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of transfer of the mobile <br/>genetic element ICEBs1~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04820 immR]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ImmR ImmR]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 14 kDa, 4.989~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 381 bp, 127 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[immA]]'', ''[[xis]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04820 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ydcN_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=immR_531130_531513_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:immR_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04820]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transcription factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[mobile genetic elements]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−	~~=The [[ImmR regulon]]:=~~
−	* ''[[xis]]''
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU04820
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04820&redirect=T BSU04820]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12101]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' [[transcription factors of the Xre family\|Xre family]]
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:''' binding of [[RapI]] to ImmR results in loss of DNA-binding activity of ImmR and subsequently in induction of ImmR-repressed genes {{PubMed\|17511812}}
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[ImmA]]-[[ImmR]] {{PubMed\|18761623}}
−	** [[RapI]]-[[ImmR]] {{PubMed\|17511812}}
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04820&redirect=T BSU04820]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P96631 P96631]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU04820]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=immR_531130_531513_-1 immR] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:''' ImmR is degraded by the anti-repressor [[ImmA]] {{PubMed\|18761623}}
−	** number of protein molecules per cell (minimal medium with glucose and ammonium): 265 {{PubMed\|24696501}}
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 65 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>,17511812,18761623, 21036995 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 70: / Line 70: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:'''
+* '''Protein family:''' [[transcription factors of the Xre family|Xre family]]
 * '''Paralogous protein(s):'''

@@ Line 1: / Line 1: @@
-* '''Description:''' transcriptional repressor,  controls expression of genes of the mobile genetic element ICEBs1, induction by the  SOS response or the [[RapI]]-[[PhrI]] sensory system <br/><br/>
+* '''Description:''' transcriptional repressor ([[transcription factors of the Xre family|Xre family]]),  controls expression of genes of the mobile genetic element ICEBs1, induction by the  SOS response or the [[RapI]]-[[PhrI]] sensory system <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator (phage-related) (Xre family)
+|style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional repressor ([[transcription factors of the Xre family|Xre family]])
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || control of transfer of the mobile <br/>genetic element ICEBs1

← Older revision		Revision as of 09:24, 17 April 2014
Line 118:		Line 118:

	* '''Additional information:''' ImmR is degraded by the anti-repressor [[ImmA]] {{PubMed\|18761623}}		* '''Additional information:''' ImmR is degraded by the anti-repressor [[ImmA]] {{PubMed\|18761623}}
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 265 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 65 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 56: / Line 56: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 92: / Line 93: @@
 === Database entries ===
 * '''Structure:'''

← Older revision		Revision as of 08:59, 19 February 2014
Line 1:		Line 1:
−		+	* '''Description:''' transcriptional repressor, controls expression of genes of the mobile genetic element ICEBs1, induction by the SOS response or the [[RapI]]-[[PhrI]] sensory system <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 66: / Line 62: @@
 === Additional information===
 =The protein=
@@ Line 84: / Line 77: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:''' binding of [[RapI]] to ImmR results in loss of DNA-binding activity of ImmR and subsequently in induction of ImmR-repressed genes  {{PubMed|17511812}}
@@ Line 116: / Line 109: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=immR_531130_531513_-1 immR] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04820 immR]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ImmR ImmR]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ImmR ImmR]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 14 kDa, 4.989

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=immR_531130_531513_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:immR_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=immR_531130_531513_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:immR_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04820]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[immA]]'', ''[[xis]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04820 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04820 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04820 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04820 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ydcN_context.gif]]