HmoB - Revision history

134.76.70.252 at 14:18, 17 April 2014

2014-04-17T14:18:08Z

134.76.70.252 at 11:24, 17 April 2014

2014-04-17T11:24:44Z

134.76.70.252 at 11:47, 8 April 2014

2014-04-08T11:47:39Z

134.76.38.147 at 13:20, 2 April 2014

2014-04-02T13:20:04Z

Jstuelk at 17:13, 4 March 2014

2014-03-04T17:13:35Z

134.76.70.252 at 12:54, 16 May 2013

2013-05-16T12:54:15Z

134.76.70.252 at 09:50, 14 May 2013

2013-05-14T09:50:09Z

134.76.70.252 at 12:28, 13 May 2013

2013-05-13T12:28:30Z

Raphael2215 at 13:24, 9 August 2012

2012-08-09T13:24:47Z

134.76.70.252 at 16:26, 6 August 2012

2012-08-06T16:26:06Z

← Older revision		Revision as of 14:18, 17 April 2014
Line 1:		Line 1:
−	* '''Description:''' heme monooxygenase<br/><br/>	+	{{#bank: HmoB}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''hmoB''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yixC, yhgC ''~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| heme monooxygenase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| degradation of heme, [[acquisition of iron]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10100 hmoB]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=HmoB ~~HmoB]'''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 18 kDa, 5.216~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 498 bp, 166 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yhgB]]'', ''[[pbpF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10100 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yhgC_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgC_1083229_1083729_-1 Expression at a glance]'''   {{PubMed\|22383849~~}~~}<br/>[[Image:hmoB_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10100]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[acquisition of iron]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU10100
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU10100&redirect=T BSU10100]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yhgC.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10427]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' binds hemin ''in vitro'' with ~1:1 stoichiometry and degrade hemin in the presence of an electron donor {{PubMed\|21873409}}
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU10100&redirect=T BSU10100]
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?structureId=3TVZ 3TVZ] {{PubMed\|22531134}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P38049 P38049]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU10100]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[hmoB]]'' {{PubMed\|8335642}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgC_1083229_1083729_-1 hmoB] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** constitutively expressed {{PubMed\|21873409}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (minimal medium with glucose and ammonium): 727 {{PubMed\|24696501}}
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1160 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 8335642 22531134 24582752 21873409</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

← Older revision		Revision as of 11:24, 17 April 2014
Line 114:		Line 114:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 727 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1160 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 14: / Line 14: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10100 hmoB]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 18 kDa, 5.216

@@ Line 51: / Line 51: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yhgC.html]
@@ Line 85: / Line 86: @@
 === Database entries ===
 * '''Structure:'''	[http://www.rcsb.org/pdb/explore/explore.do?structureId=3TVZ 3TVZ] {{PubMed|22531134}}

@@ Line 34: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 61: / Line 57: @@
 === Additional information===
 =The protein=
@@ Line 79: / Line 72: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 109: / Line 102: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgC_1083229_1083729_-1 hmoB] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 137: / Line 130: @@
 =References=
-'''Additional references:''' {{PubMed|21873409}}
+<pubmed> 8335642 22531134 24582752 21873409</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgC_1083229_1083729_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:hmoB_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhgC_1083229_1083729_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:hmoB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10100]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhgB]]'', ''[[pbpF]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10100 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10100 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yhgC_context.gif]]

@@ Line 1: / Line 1: @@
+* '''Description:''' heme monooxygenase<br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-