HelP - Revision history

Jstuelk at 16:07, 28 May 2015

2015-05-28T16:07:12Z

134.76.38.147 at 13:03, 2 April 2014

2014-04-02T13:03:12Z

Jstuelk at 08:38, 19 February 2014

2014-02-19T08:38:46Z

134.76.70.252 at 12:37, 16 May 2013

2013-05-16T12:37:30Z

134.76.70.252 at 09:32, 14 May 2013

2013-05-14T09:32:57Z

134.76.70.252 at 12:12, 13 May 2013

2013-05-13T12:12:29Z

Jstuelk at 14:43, 13 February 2013

2013-02-13T14:43:16Z

Jstuelk at 14:32, 13 February 2013

2013-02-13T14:32:13Z

Jstuelk: moved YdcP to HelP: 23326247

2013-02-13T14:28:09Z

moved YdcP to HelP: 23326247

134.76.70.252 at 15:22, 6 August 2012

2012-08-06T15:22:02Z

@@ Line 19: / Line 19: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 378 bp, 126 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydcO]]'', ''[[ydcQ]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydcO]]'', ''[[conQ]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04850 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04850 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04850 DNA_with_flanks]

@@ Line 51: / Line 51: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 85: / Line 86: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 72: / Line 72: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydcP_532922_533302_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydcP_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydcP_532922_533302_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ydcP_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04850]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydcO]]'', ''[[ydcQ]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04850 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04850 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04850 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04850 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04850 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04850 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ydcP_context.gif]]

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || conjugation and replication of ICEBs1
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04850 helP]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04850 helP]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 13 kDa, 5.309
@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydcO]]'', ''[[ydcQ]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12292&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04850 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04850 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04850 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ydcP_context.gif]]

@@ Line 63: / Line 63: @@
 * '''Catalyzed reaction/ biological activity:'''
+** enables the host-encoded helicase [[PcrA]] to unwind the double-stranded ICEBs1 DNA {{PubMed|23326247}}
 * '''Protein family:'''

@@ Line 1: / Line 1: @@
+* '''Description:''' helicase processivity factor <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 6: / Line 5: @@
 |''ydcP''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ydcP ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || helicase processivity factor
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || conjugation and replication of ICEBs1
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04850 ydcP]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU04850 helP]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 13 kDa, 5.309
@@ Line 35: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 105: / Line 100: @@
 * '''Operon:'''
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydcP_532922_533302_1 ydcP] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydcP_532922_533302_1 helP] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 114: / Line 109: @@
 * '''Additional information:'''
-** A [[ncRNA]] is predicted between ''[[ydcO]]'' and ''[[ydcP]]'' {{PubMed|20525796}}
+** A [[ncRNA]] is predicted between ''[[ydcO]]'' and ''[[helP]]'' {{PubMed|20525796}}
 =Biological materials =
@@ Line 135: / Line 130: @@
 =References=
-<pubmed>20525796</pubmed>
+<pubmed>20525796 23326247 </pubmed>
 [[Category:Protein-coding genes]]

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