Hag - Revision history

Jstuelk: /* Biological materials */

2015-07-03T14:46:03Z

‎Biological materials

2015-07-02T13:08:20Z

2014-09-25T08:18:08Z

‎References

2014-04-17T14:08:16Z

2014-04-17T09:34:01Z

2014-04-08T11:49:09Z

2014-04-02T14:55:45Z

2014-03-05T12:54:16Z

2014-01-31T09:53:31Z

‎Biological materials

2013-11-12T09:27:18Z

@@ Line 59: / Line 59: @@
 ===Phenotypes of a mutant ===
-No swarming motility on B medium. [http://www.ncbi.nlm.nih.gov/sites/entrez/19202088 PubMed]
+* no swarming motility on B medium. [http://www.ncbi.nlm.nih.gov/sites/entrez/19202088 PubMed]
 === Database entries ===
@@ Line 145: / Line 148: @@
 ** 1A783 ( ''hag''::''erm''), {{PubMed|2174860}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A783&Search=1A783 BGSC]
 ** 1A842 ( ''hag''::''kan''), {{PubMed|14762011}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A842&Search=1A842 BGSC]
 * '''Expression vector:'''
@@ Line 158: / Line 165: @@
 =Labs working on this gene/protein=
 =Your additional remarks=
@@ Line 165: / Line 173: @@
 <pubmed>22672726 25251856 </pubmed>
 ==Original Publications==
-<pubmed> 23144244 21602220 21856853 2498284,9648743,9096206,7708689,19202088, 18763711, 21895793 10809682 19118355 17555441 20534509 15378759</pubmed>
+<pubmed> 18566286,26122431,23144244 21602220 21856853 2498284,9648743,9096206,7708689,19202088, 18763711, 21895793 10809682 19118355 17555441 20534509 15378759</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 163: / Line 163: @@
 =References=
 ==Reviews==
-<pubmed>22672726 </pubmed>
+<pubmed>22672726 25251856 </pubmed>
 ==Original Publications==
 <pubmed> 23144244 21602220 21856853 2498284,9648743,9096206,7708689,19202088, 18763711, 21895793 10809682 19118355 17555441 20534509 15378759</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 136: / Line 136: @@
 ** number of protein molecules per cell (minimal medium with glucose and ammonium): 150241 {{PubMed|24696501}}
 ** number of protein molecules per cell (complex medium with amino acids, without glucose): 280953 {{PubMed|24696501}}
 =Biological materials =
 * '''Mutant:''' GP901 (aphA3), GP902 (tet) {{PubMed|21856853}}, both available in [[Jörg Stülke]]'s lab
 ** 1A915 ( ''hag''::''cat''), {{PubMed|19202088}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A915&Search=1A915 BGSC]

@@ Line 134: / Line 134: @@
 ** the ''[[hag]]'' gene is strongly overexpressed in a ''[[ymdB]]'' mutant (loss of bistable gene expression) {{PubMed|21856853}}
 ** belongs to the 100 [[most abundant proteins]] {{PubMed|15378759}}
 =Biological materials =

@@ Line 17: / Line 17: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=Hag Hag]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 4.782

@@ Line 60: / Line 60: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hag.html]
@@ Line 100: / Line 101: @@
 === Database entries ===
 * '''Structure:'''	[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=3A5X 3A5X] (from ''Salmonella typhimurium'', 42% identity)

@@ Line 40: / Line 40: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[motility and chemotaxis]]}}
+{{SubtiWiki category|[[motility and chemotaxis]]}},
 = This gene is a member of the following [[regulons]] =
@@ Line 65: / Line 66: @@
 === Additional information===
 =The protein=
@@ Line 83: / Line 81: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 131: / Line 129: @@
 * '''Additional information:'''
 ** the ''[[hag]]'' gene is strongly overexpressed in a ''[[ymdB]]'' mutant (loss of bistable gene expression) {{PubMed|21856853}}
 =Biological materials =
@@ Line 159: / Line 158: @@
 ==Original Publications==
-<pubmed> 23144244 21602220 21856853 2498284,9648743,9096206,7708689,19202088, 18763711, 21895793 10809682 19118355 17555441 20534509 </pubmed>
+<pubmed> 23144244 21602220 21856853 2498284,9648743,9096206,7708689,19202088, 18763711, 21895793 10809682 19118355 17555441 20534509 15378759</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 134: / Line 134: @@
 =Biological materials =
-* '''Mutant:''' GP901 (aphA3), GP902 (tet), both available in [[Stülke]] lab
+* '''Mutant:''' GP901 (aphA3), GP902 (tet) {{PubMed|21856853}}, both available in [[Jörg Stülke]]'s lab
 ** 1A915 ( ''hag''::''cat''), {{PubMed|19202088}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A915&Search=1A915 BGSC]
 ** 1A783 ( ''hag''::''erm''), {{PubMed|2174860}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A783&Search=1A783 BGSC]
@@ Line 140: / Line 140: @@
 * '''Expression vector:'''
-** expression in ''B. subtilis'', in [[pBQ200]]: pGP1089, available in [[Stülke]] lab
+** expression in ''B. subtilis'', in [[pBQ200]]: pGP1089, available in [[Jörg Stülke]]'s lab
-* '''lacZ fusion:''' pGP1035 (in [[pAC6]]), pGP755 (in [[pAC7]]), there is also a series of promoter deletion variants in [[pAC6]] and [[pAC7]], all available in [[Stülke]] lab
+* '''lacZ fusion:''' pGP1035 (in [[pAC6]]), pGP755 (in [[pAC7]]), there is also a series of promoter deletion variants in [[pAC6]] and [[pAC7]] {{PubMed|21856853}}, all available in [[Jörg Stülke]]'s lab
-* '''GFP fusion:''' BP494 (bglS:: (hag-promoter-cfp-aphA3)), BP496 (amyE:: (hag-promoter-iyfp-cat)), available in [[Stülke]] lab
+* '''GFP fusion:''' BP494 (bglS:: (hag-promoter-cfp-aphA3)), BP496 (amyE:: (hag-promoter-iyfp-cat)), available in [[Jörg Stülke]]'s lab
 * '''two-hybrid system:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35360 hag]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/Hag Hag]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=Hag Hag]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 4.782