GlpF - Revision history

Jstuelk: /* Biological materials */

2014-12-18T11:29:35Z

‎Biological materials

134.76.38.147 at 13:16, 2 April 2014

2014-04-02T13:16:59Z

134.76.70.252 at 10:24, 7 January 2014

2014-01-07T10:24:42Z

Jstuelk at 19:46, 18 June 2013

2013-06-18T19:46:07Z

Jstuelk: /* References */

2013-06-04T11:14:17Z

‎References

134.76.70.252 at 12:51, 16 May 2013

2013-05-16T12:51:27Z

134.76.70.252 at 09:47, 14 May 2013

2013-05-14T09:47:22Z

134.76.70.252 at 12:25, 13 May 2013

2013-05-13T12:25:49Z

Jstuelk: /* References */

2012-10-08T19:10:32Z

‎References

Jstuelk at 19:07, 8 October 2012

2012-10-08T19:07:56Z

← Older revision		Revision as of 11:29, 18 December 2014
Line 1:		Line 1:
−	* '''Description:''' glycerol facilitator <br/><br/>	+	{{#bank: GlpF}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''glpF''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| glycerol facilitator~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| glycerol uptake~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09280 glpF]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=glpF glpF]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 28 kDa, 9.506~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 822 bp, 274 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[glpP]]'', ''[[glpK]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09280 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:glpF_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glpF_1002501_1003325_1 Expression at a glance]'''   {{PubMed\|22383849~~}~~}<br/>[[Image:glpF_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09280]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transporters/ other]]}},~~
−	~~{{SubtiWiki category\|[[utilization of specific carbon sources]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[AbrB regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[CcpA regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[GlpP regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU09280
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU09280&redirect=T BSU09280]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/glpFK.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10186]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' View classification (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU09280&redirect=T BSU09280]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P18156 P18156]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU09280]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[glpF]]-[[glpK]]'' {{PubMed\|2127799}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glpF_1002501_1003325_1 glpF] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|2127799}}
−
−	* '''Regulation:'''
−	** repressed by glucose (8-fold) ([[CcpA]]) {{PubMed\|12850135}}
−	** induction by glycerol ([[GlpP]]) {{PubMed\|8436953}}
−	** strongly induced in response to glucose starvation in M9 medium {{PubMed\|23033921}}
−
−	* '''Regulatory mechanism:'''
−	** [[CcpA]]: transcription repression {{PubMed\|12850135}}
−	** [[GlpP]]-dependent [[RNA switch]] (transcriptional antitermination) {{PubMed\|8436953}}
−	** [[AbrB]]: transcription activation {{PubMed\|20817675}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>12850135 8436953 11929549 23033921,22900538,20817675</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 57: / Line 57: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/glpFK.html]
@@ Line 94: / Line 95: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 15: / Line 15: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09280 glpF]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=glpF glpF]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 9.506

@@ Line 36: / Line 36: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 112: / Line 112: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glpF_1002501_1003325_1 glpF] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigA]] {{PubMed|2127799}}
+* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|2127799}}
 * '''Regulation:'''

@@ Line 146: / Line 146: @@
 =References=
-'''Additional publications:''' {{PubMed|23033921,22900538,20817675}}
+<pubmed>12850135 8436953 11929549 23033921,22900538,20817675</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 28: / Line 28: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glpF_1002501_1003325_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:glpF_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=glpF_1002501_1003325_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:glpF_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09280]]
 |-
 |}

@@ Line 23: / Line 23: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[glpP]]'', ''[[glpK]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09280 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09280 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:glpF_context.gif]]

@@ Line 36: / Line 36: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/><br/><br/><br/><br/>
@@ Line 121: / Line 117: @@
 ** repressed by glucose (8-fold) ([[CcpA]]) {{PubMed|12850135}}
 ** induction by glycerol ([[GlpP]]) {{PubMed|8436953}}
 * '''Regulatory mechanism:'''
@@ Line 149: / Line 146: @@
 =References=
-'''Additional publications:''' {{PubMed|20817675}}
+'''Additional publications:''' {{PubMed|23033921,20817675}}
 <pubmed>12850135 8436953 11929549 22900538 </pubmed>
 [[Category:Protein-coding genes]]