Ggt - Revision history

Julian at 12:51, 24 April 2014

2014-04-24T12:51:54Z

Julian at 11:01, 24 April 2014

2014-04-24T11:01:31Z

Julian at 09:31, 22 April 2014

2014-04-22T09:31:28Z

Jstuelk: /* References */

2014-04-11T12:06:37Z

‎References

134.76.38.147 at 13:52, 2 April 2014

2014-04-02T13:52:09Z

Jstuelk: /* References */

2014-02-18T18:19:40Z

‎References

Jstuelk: /* References */

2013-11-28T16:50:50Z

‎References

Jstuelk: /* References */

2013-06-04T11:18:06Z

‎References

134.76.70.252 at 13:30, 16 May 2013

2013-05-16T13:30:59Z

134.76.70.252 at 10:22, 14 May 2013

2013-05-14T10:22:43Z

← Older revision		Revision as of 12:51, 24 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' gamma-glutamyltransferase <br/><br/>~~	+	{{#bank: Ggt}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ggt''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''pac ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| gamma-glutamyltransferase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| degradation of poly-glutamate capsules~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18410 ggt]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 64 kDa, 5.453~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1761 bp, 587 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yoeD]]'', ''[[yofA]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18410 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ggt_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ggt_2004677_2006440_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:ggt_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18410]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[capsule biosynthesis and degradation]]}},~~
−	~~{{SubtiWiki category\|[[Sporulation#Sporulation_proteins/_other\|sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~[[Efp-dependent proteins]]~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU18410
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18410&redirect=T BSU18410]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11838]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' (5-L-glutamyl)-peptide + an amino acid = peptide + 5-L-glutamyl amino acid (according to Swiss-Prot)
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18410&redirect=T BSU18410]
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2V36 2V36]
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54422 P54422]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU18410]
−
−	* '''E.C. number:''' [http://www.expasy.org/enzyme/2.3.2.2 2.3.2.2]
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[ggt]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ggt_2004677_2006440_1 ggt] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** strongly induced in response to glucose starvation in M9 medium {{PubMed\|23033921}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−	** [[translation]] is likely to require [[Efp]] due to the presence of several consecutive proline residues {{PubMed\|23239624,23239623}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>15583164,12892879,18957862,20088880 22383849 23335395,23033921,21513304,21987357 24279353 24531494 24719567 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 39: / Line 39: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[capsule biosynthesis and degradation]]}},
-{{SubtiWiki category|[[sporulation/ other]]}}
+{{SubtiWiki category|[[Sporulation#Sporulation_proteins/_other|sporulation proteins]]}}
 = This gene is a member of the following [[regulons]] =

@@ Line 38: / Line 38: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[capsule biosynthesis and degradation]]}}
+{{SubtiWiki category|[[capsule biosynthesis and degradation]]}},
 = This gene is a member of the following [[regulons]] =

@@ Line 138: / Line 138: @@
 =References=
-<pubmed>15583164,12892879,18957862,20088880 22383849 23335395,23033921,21513304,21987357 24279353 24531494 </pubmed>
+<pubmed>15583164,12892879,18957862,20088880 22383849 23335395,23033921,21513304,21987357 24279353 24531494 24719567 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 52: / Line 52: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 90: / Line 91: @@
 === Database entries ===
 * '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2V36 2V36]

@@ Line 136: / Line 136: @@
 =References=
-<pubmed>15583164,12892879,18957862,20088880 22383849 23335395,23033921,21513304,21987357</pubmed>
+<pubmed>15583164,12892879,18957862,20088880 22383849 23335395,23033921,21513304,21987357 24279353 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ggt_2004677_2006440_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ggt_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ggt_2004677_2006440_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ggt_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18410]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoeD]]'', ''[[yofA]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18410 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18410 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ggt_context.gif]]