GerKA - Revision history

Jstuelk at 05:13, 25 April 2014

2014-04-25T05:13:06Z

134.76.38.147 at 12:58, 2 April 2014

2014-04-02T12:58:52Z

134.76.70.252 at 15:11, 11 November 2013

2013-11-11T15:11:35Z

Jstuelk at 10:45, 12 June 2013

2013-06-12T10:45:25Z

134.76.70.252 at 12:32, 16 May 2013

2013-05-16T12:32:47Z

134.76.70.252 at 09:28, 14 May 2013

2013-05-14T09:28:23Z

134.76.70.252 at 12:08, 13 May 2013

2013-05-13T12:08:20Z

Jstuelk at 18:32, 30 April 2013

2013-04-30T18:32:36Z

Jstuelk: /* References */

2013-02-13T12:14:33Z

‎References

Jstuelk at 17:01, 25 January 2013

2013-01-25T17:01:42Z

← Older revision		Revision as of 05:13, 25 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' nutrient receptor <br/><br/>~~	+	{{#bank: GerKA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''gerKA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| nutrient receptor~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| [[germination]] response to the combination of glucose, <br/>fructose, aspartate, and KCl~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03700 gerKA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=GerKA GerKA]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 60 kDa, 5.206~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1632 bp, 544 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[gerKD]]'', ''[[gerKC]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03700 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03700 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03700 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:gerKA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:gerKA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03700]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[germination]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigG regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SpoVT regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU03700
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU03700&redirect=T BSU03700]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/gerKACB.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11392]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' gerABKA family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−	** contains multiple membrane-spanning domains {{PubMed\|23335419}}
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[GerKA]]-[[GerKB]]-[[GerKC]] (tentative receptor complex) {{PubMed\|21696470}}
−	** [[GerKA]] is part of the [[germinosome]] in the spore inner membrane {{PubMed\|21696470}}
−
−	* '''[[Localization]]:'''
−	** outer surface of the inner spore membrane {{PubMed\|23335419,21696470}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU03700&redirect=T BSU03700]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P49939 P49939]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU03700]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−	* 700 molecules are present per spore {{PubMed\|23749970}}
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[gerKA]]-[[gerKC]]-[[gerKB]]'' (according to [http://dbtbs.hgc.jp/COG/prom/gerKACB.html DBTBS])
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 gerKA] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' SigG {{PubMed\|16707705}}
−
−	* '''Regulation:'''
−	** expressed during sporulation ([[SigG]], [[SpoVT]]) {{PubMed\|16707705}}
−
−	* '''Regulatory mechanism:'''
−	** [[SpoVT]]: transcription repression {{PubMed\|16707705}}
−
−	* '''Additional information:'''
−	** 700 molecules are present per spore {{PubMed\|23749970}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>16707705,16352818, 21696470 23335419 23396907 22343299,16740944, 23749970</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 56: / Line 56: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/gerKACB.html]
@@ Line 94: / Line 95: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03700 gerKA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/GerKA GerKA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=GerKA GerKA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 60 kDa, 5.206

@@ Line 104: / Line 104: @@
 === Additional information===
 =Expression and regulation=
@@ Line 120: / Line 121: @@
 * '''Additional information:'''
 =Biological materials =
@@ Line 140: / Line 142: @@
 =References=
-'''Additional publications:''' {{PubMed|22343299,16740944}}
-<pubmed>16707705,16352818, 21696470 23335419 23396907 </pubmed>
+<pubmed>16707705,16352818, 21696470 23335419 23396907 22343299,16740944, 23749970</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gerKA_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gerKA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03700]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gerKD]]'', ''[[gerKC]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03700 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03700 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03700 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03700 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03700 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03700 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:gerKA_context.gif]]

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1632 bp, 544 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yczF]]'', ''[[gerKC]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gerKD]]'', ''[[gerKC]]''
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12178&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

@@ Line 78: / Line 78: @@
 * '''Domains:'''
 * '''Modification:'''
@@ Line 110: / Line 111: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerKA_420110_421744_1 gerKA] {{PubMed|22383849}}
-* '''Sigma factor:''' SigG {{PubMed|16707705}}
+* '''[[Sigma factor]]:''' SigG {{PubMed|16707705}}
 * '''Regulation:'''
@@ Line 140: / Line 141: @@
 =References=
 '''Additional publications:''' {{PubMed|22343299,16740944}}
-<pubmed>16707705,16352818, 21696470</pubmed>
+<pubmed>16707705,16352818, 21696470 23335419</pubmed>
 [[Category:Protein-coding genes]]