FlgM - Revision history

Jstuelk: /* Original Publications */

2015-08-10T09:01:19Z

‎Original Publications

Jstuelk at 14:33, 19 October 2014

2014-10-19T14:33:02Z

Jstuelk: /* References */

2014-09-25T08:18:34Z

‎References

Jstuelk: /* References */

2014-04-08T14:42:37Z

‎References

Jstuelk at 14:41, 8 April 2014

2014-04-08T14:41:52Z

134.76.38.147 at 14:56, 2 April 2014

2014-04-02T14:56:04Z

134.76.70.252 at 09:27, 12 November 2013

2013-11-12T09:27:48Z

134.76.70.252 at 14:42, 16 May 2013

2013-05-16T14:42:29Z

134.76.70.252 at 11:24, 14 May 2013

2013-05-14T11:24:33Z

134.76.70.252 at 13:59, 13 May 2013

2013-05-13T13:59:13Z

← Older revision		Revision as of 09:01, 10 August 2015
Line 1:		Line 1:
−	* '''Description:~~''' anti-[[SigD]], regulation of flagellin, [[motility and chemotaxis]] <br/><br/>~~	+	{{#bank: FlgM}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''flgM''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| anti-[[SigD]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| control of [[SigD]] activity~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35430 flgM]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=FlgM FlgM]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 9 kDa, 9.918~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 264 bp, 88 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[flgN]]'', ''[[yvyF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35430 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:flgM_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=flgM_3640285_3640551_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:flgM_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35430]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sigma factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[motility and chemotaxis]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[ComK regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[DegU regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[ScoC regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigD regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU35430
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU35430&redirect=T BSU35430]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/comFABC-yvyF-flgM-yvyG-flgKL.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10399]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' flgM family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:''' [[FlgM]]-[[SigD]] {{PubMed\|10207036}}
−
−	* '''[[Localization]]:'''
−	** secreted and extracellularly degraded by the proteases [[Epr]] and [[WprA]] {{PubMed\|25313396}}
−	** secretion of FlgM requires the [[FliF]]/[[FliG]] basal body proteins, the flagellar type III export apparatus components [[FliO]], [[FliP]], [[FliQ]], [[FliR]], [[FlhA]], and [[FlhB]], and the substrate specificity switch regulator [[FliK]] {{PubMed\|25313396}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU35430&redirect=T BSU35430]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P39809 P39809]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU35430]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:'''
−	** ''[[comFA]]-[[comFB]]-[[comFC]]-[[yvyF]]-[[flgM]]-[[flgN]]-[[flgK]]-[[flgL]]'' {{PubMed\|8412657}}
−	** ''[[yvyF]]-[[flgM]]-[[flgN]]-[[flgK]]-[[flgL]]'' {{PubMed\|8045879}}
−	** ''[[flgM]]-[[flgN]]-[[flgK]]-[[flgL]]'' {{PubMed\|21736639}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=flgM_3640285_3640551_-1 flgM] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−	** ''[[comFA]]'': [[SigA]] {{PubMed\|8412657}}
−	** ''[[yvyF]]'': [[SigD]] {{PubMed\|8045879}}
−	** ''[[flgM]]'': [[SigD]] {{PubMed\|21736639}}
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−	** [[ComK]]: transcription activation {{PubMed\|8412657}}
−	** [[ScoC]]: transcription repression {{PubMed\|19898538}}
−	** ''[[flgM]]'': [[DegU]]-P: transcription activation {{PubMed\|21736639}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** 1A764 (no resistance), {{PubMed\|8045879}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A764&Search=1A764 BGSC]
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed>25251856 </pubmed>~~
−	~~==Original Publications==~~
−	~~<pubmed>8955328,19898538 8412657 8045879 , 20233303 10207036 8655488 23352839 21736639 25313396 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 1: / Line 1: @@
-* '''Description:''' anti-[[SigD]], regulation of flagellin, motility, and chemotaxis <br/><br/>
+* '''Description:''' anti-[[SigD]], regulation of flagellin, [[motility and chemotaxis]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 92: / Line 92: @@
 * '''[[Localization]]:'''
 === Database entries ===
@@ Line 153: / Line 155: @@
 <pubmed>25251856 </pubmed>
 ==Original Publications==
-<pubmed>8955328,19898538 8412657 8045879 , 20233303 10207036 8655488 23352839 21736639</pubmed>
+<pubmed>8955328,19898538 8412657 8045879 , 20233303 10207036 8655488 23352839 21736639 25313396 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 150: / Line 150: @@
 =References=
 <pubmed>8955328,19898538 8412657 8045879 , 20233303 10207036 8655488 23352839 21736639</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 150: / Line 150: @@
 =References=
-'''Additional publications:''' {{PubMed|21736639}}
+<pubmed>8955328,19898538 8412657 8045879 , 20233303 10207036 8655488 23352839 21736639</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 264 bp, 88 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvyG]]'', ''[[yvyF]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[flgN]]'', ''[[yvyF]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35430 DNA_with_flanks]
@@ Line 81: / Line 81: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 108: / Line 108: @@
 =Expression and regulation=
 * '''Operon:'''
-** ''[[comFA]]-[[comFB]]-[[comFC]]-[[yvyF]]-[[flgM]]-[[yvyG]]-[[flgK]]-[[flgL]]'' {{PubMed|8412657}}
+** ''[[comFA]]-[[comFB]]-[[comFC]]-[[yvyF]]-[[flgM]]-[[flgN]]-[[flgK]]-[[flgL]]'' {{PubMed|8412657}}
-** ''[[yvyF]]-[[flgM]]-[[yvyG]]-[[flgK]]-[[flgL]]'' {{PubMed|8045879}}
+** ''[[yvyF]]-[[flgM]]-[[flgN]]-[[flgK]]-[[flgL]]'' {{PubMed|8045879}}
-** ''[[flgM]]-[[yvyG]]-[[flgK]]-[[flgL]]'' {{PubMed|21736639}}
+** ''[[flgM]]-[[flgN]]-[[flgK]]-[[flgL]]'' {{PubMed|21736639}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=flgM_3640285_3640551_-1 flgM] {{PubMed|22383849}}

@@ Line 58: / Line 58: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/comFABC-yvyF-flgM-yvyG-flgKL.html]
@@ Line 93: / Line 94: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35430 flgM]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/FlgM FlgM]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=FlgM FlgM]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 9 kDa, 9.918

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=flgM_3640285_3640551_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:flgM_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=flgM_3640285_3640551_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:flgM_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35430]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvyG]]'', ''[[yvyF]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35430 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35430 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:flgM_context.gif]]