EfeU - Revision history

134.76.70.252 at 11:45, 8 April 2014

2014-04-08T11:45:56Z

Jstuelk at 16:29, 21 June 2013

2013-06-21T16:29:41Z

Jstuelk: Jstuelk moved page YwbL to EfeU: 23764491

2013-06-21T15:55:38Z

Jstuelk moved page YwbL to EfeU: 23764491

134.76.70.252 at 14:54, 16 May 2013

2013-05-16T14:54:28Z

134.76.70.252 at 11:36, 14 May 2013

2013-05-14T11:36:11Z

134.76.70.252 at 14:10, 13 May 2013

2013-05-13T14:10:46Z

Jstuelk at 10:29, 30 November 2012

2012-11-30T10:29:55Z

134.76.70.252 at 17:15, 7 August 2012

2012-08-07T17:15:55Z

134.76.70.252 at 11:52, 23 April 2012

2012-04-23T11:52:24Z

134.76.70.252 at 09:06, 17 April 2012

2012-04-17T09:06:28Z

@@ Line 18: / Line 18: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/EfeU EfeU]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in  [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=EfeU EfeU]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 52 kDa, 8.958

@@ Line 1: / Line 1: @@
-* '''Description:''' elemental iron uptake system (permease) <br/><br/>
+* '''Description:''' elemental iron uptake system (permease), high affinity uptake of ferric iron (Fe(III)) <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 12: / Line 12: @@
 |style="background:#ABCDEF;" align="center"| '''Product''' || elemental iron uptake system (permease)
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || iron uptake
+|style="background:#ABCDEF;" align="center"|'''Function''' || elemental iron uptake
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38280 ywbL]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38280 efeU]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YwbL YwbL]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/EfeU EfeU]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1443 bp, 481 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbM]]'', ''[[thiE]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[efeO]]'', ''[[thiE]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38280 DNA_with_flanks]
@@ Line 92: / Line 92: @@
 * '''[[SubtInteract|Interactions]]:'''
-** ([[YwbL]]-[[YwbM]])-[[YwbN]] {{PubMed|23180473}}
+** [[EfeO]]-[[EfeU]]-[[EfeB]] {{PubMed|23180473,23764491}}
 * '''[[Localization]]:'''
@@ Line 111: / Line 111: @@
 =Expression and regulation=
 * '''Operon:'''
-** ''[[ywbL]]-[[ywbM]]-[[ywbN]]'' {{PubMed|9353933}}
+** ''[[efeU]]-[[efeO]]-[[efeB]]'' {{PubMed|9353933}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeU_3929105_3930550_-1 ywbL] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeU_3929105_3930550_-1 efeU] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''Sigma factor:''' [[SigA]] {{PubMed|23764491}}
 * '''Regulation:'''
@@ Line 145: / Line 145: @@
 =References=
-<pubmed>16672620,23180473,12354229, </pubmed>
+<pubmed>16672620,23180473,12354229, 23764491</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 31: / Line 31: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeU_3929105_3930550_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ywbL_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=efeU_3929105_3930550_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ywbL_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38280]]
 |-
 |}

@@ Line 26: / Line 26: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbM]]'', ''[[thiE]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38280 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38280 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ywbL_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || iron uptake
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU38280 ywbL]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38280 ywbL]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YwbL YwbL]
@@ Line 26: / Line 26: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywbM]]'', ''[[thiE]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15854&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38280 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ywbL_context.gif]]

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