DynA - Revision history

134.76.38.147 at 14:01, 2 April 2014

2014-04-02T14:01:10Z

134.76.70.252 at 14:17, 18 November 2013

2013-11-18T14:17:30Z

134.76.70.252 at 13:42, 16 May 2013

2013-05-16T13:42:52Z

134.76.70.252 at 10:32, 14 May 2013

2013-05-14T10:32:04Z

134.76.70.252 at 13:06, 13 May 2013

2013-05-13T13:06:57Z

Jstuelk at 18:58, 20 December 2012

2012-12-20T18:58:47Z

Jstuelk: /* References */

2012-11-23T09:02:32Z

‎References

Jstuelk at 17:12, 16 October 2012

2012-10-16T17:12:54Z

Jstuelk at 16:59, 16 October 2012

2012-10-16T16:59:42Z

134.76.70.252 at 10:55, 7 August 2012

2012-08-07T10:55:23Z

← Older revision		Revision as of 14:01, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' dynamin-like protein, mediates membrane fusion<br/><br/>~~	+	{{#bank: DynA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''dynA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ypbR ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| dynamin-like protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| fusion of membranes~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22030 dynA]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=DynA DynA]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 137 kDa, 5.724~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 3579 bp, 1193 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ypbS]]'', ''[[fbpC]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22030 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ypbR_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypbR_2312529_2316110_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:dynA_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22030]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[cell division]]}},~~
−	~~{{SubtiWiki category\|[[cell shape]]}},~~
−	~~{{SubtiWiki category\|[[membrane dynamics]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU22030
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/mrgC.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11604]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' mediates nucleotide independent membrane fusion ''in vitro'' {{PubMed\|21205012}}
−
−	* '''Protein family:''' gerABKA family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:''' two separate dynamin-like subunits and GTPase domains {{PubMed\|21205012}}
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):''' Mg(2+) {{PubMed\|21205012}}
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** forms oligomers {{PubMed\|21205012}}
−	** [[DynA]]-[[rny\|RNase Y]] {{PubMed\|23060960}}
−	** [[DynA]]-[[YneK]] {{PubMed\|23060960}}
−	** [[DynA]]-[[YwpG]] {{PubMed\|23060960}}
−
−	* '''[[Localization]]:'''
−	** associated to the membrane {{PubMed\|21205012}}
−	** membrane, forms foci at the site of septation {{PubMed\|23060960}}
−	** colocalizes with [[FtsZ]] {{PubMed\|23249255}}
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54159 P54159]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU22030]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''dynA'' {{PubMed\|8396117}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypbR_2312529_2316110_-1 dynA] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigA]] {{PubMed\|8396117}}
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 23109540 20970992 21599493 15040446 </pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed> 8396117 21205012 20525796 23060960 23249255 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22030 dynA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/DynA DynA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=DynA DynA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 137 kDa, 5.724

@@ Line 31: / Line 31: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypbR_2312529_2316110_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:dynA_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypbR_2312529_2316110_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:dynA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22030]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypbS]]'', ''[[fbpC]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22030 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22030 DNA_with_flanks]
 |-
 |-

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || fusion of membranes
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU22030 dynA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22030 dynA]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/DynA DynA]
@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypbS]]'', ''[[fbpC]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14120&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22030 Advanced_DNA]
 |-
 |-

@@ Line 42: / Line 42: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[membrane dynamics]]}},
 {{SubtiWiki category|[[membrane proteins]]}}
@@ Line 94: / Line 96: @@
 ** associated to the membrane {{PubMed|21205012}}
 ** membrane, forms foci at the site of septation {{PubMed|23060960}}
 === Database entries ===
@@ Line 143: / Line 146: @@
 <pubmed> 23109540 20970992 21599493 15040446 </pubmed>
 == Original publications ==
-<pubmed> 8396117 21205012 20525796 23060960</pubmed>
+<pubmed> 8396117 21205012 20525796 23060960 23249255 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 15: / Line 15: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU22030 dynA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 137 kDa, 5.724
@@ Line 85: / Line 87: @@
 * '''[[SubtInteract|Interactions]]:'''
 ** forms oligomers {{PubMed|21205012}}
-** [[DynA]]-[[RNase Y|rny]] {{PubMed|23060960}}
+** [[DynA]]-[[rny|RNase Y]] {{PubMed|23060960}}
 ** [[DynA]]-[[YneK]] {{PubMed|23060960}}
 ** [[DynA]]-[[YwpG]] {{PubMed|23060960}}
@@ Line 91: / Line 93: @@
 * '''[[Localization]]:'''
 ** associated to the membrane {{PubMed|21205012}}
-** forms foci at the site of septation {{PubMed|23060960}}
+** membrane, forms foci at the site of septation {{PubMed|23060960}}
 === Database entries ===

@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 89: / Line 85: @@
 * '''[[SubtInteract|Interactions]]:'''
 ** forms oligomers {{PubMed|21205012}}
-* '''[[Localization]]:''' associated to the membrane {{PubMed|21205012}}
+* '''[[Localization]]:'''
+** associated to the membrane {{PubMed|21205012}}
 === Database entries ===
@@ Line 137: / Line 137: @@
 =References=
-<pubmed> 8396117 21205012 20525796</pubmed>
+<pubmed> 8396117 21205012 20525796 23060960</pubmed>
 [[Category:Protein-coding genes]]