DltC - Revision history

Jstuelk: /* Database entries */

2015-07-21T08:15:44Z

‎Database entries

Jstuelk: /* Original publications */

2015-07-21T08:12:32Z

‎Original publications

Jstuelk: /* Original publications */

2015-07-21T08:10:40Z

‎Original publications

Jstuelk: /* Reviews */

2014-06-19T11:31:34Z

‎Reviews

Jstuelk: /* References */

2014-06-19T11:25:56Z

‎References

134.76.70.252 at 09:39, 17 April 2014

2014-04-17T09:39:17Z

134.76.70.252 at 11:43, 8 April 2014

2014-04-08T11:43:29Z

134.76.38.147 at 15:08, 2 April 2014

2014-04-02T15:08:50Z

Jstuelk at 18:15, 30 August 2013

2013-08-30T18:15:07Z

134.76.70.252 at 14:55, 16 May 2013

2013-05-16T14:55:14Z

← Older revision		Revision as of 08:15, 21 July 2015
Line 1:		Line 1:
−	* '''Description:~~''' D-alanine carrier protein, alanylation of teichoic acid provides some resistance against positively charged antimicrobial peptides <br/><br/>~~	+	{{#bank: DltC}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''dltC''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ipa-3r ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| D-alanine carrier protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| biosynthesis of teichoic acid~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38520 dltC]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=DltC DltC]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 8 kDa, 3.621~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 234 bp, 78 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[dltB]]'', ''[[dltD]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38520 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:dltC_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dltC_3954987_3955223_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:dltC_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38520]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[cell wall synthesis]]}},~~
−	~~{{SubtiWiki category\|[[biosynthesis of cell wall components]]}},~~
−	~~{{SubtiWiki category\|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigD regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigM regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigX regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[Spo0A regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[stringent response]]}},~~
−	~~{{SubtiWiki regulon\|[[YvrHb regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU38520
−
−	~~===Phenotypes of a mutant ===~~
−	* more sensitive to nisin {{PubMed\|23980836}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38520&redirect=T BSU38520]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dltABCDE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10549]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' ATP + D-alanine + poly(ribitol phosphate) = AMP + diphosphate + O-D-alanyl-poly(ribitol phosphate) (according to Swiss-Prot)
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU38520&redirect=T BSU38520]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P39579 P39579]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU38520]
−
−	* '''E.C. number:''' [http://www.expasy.org/enzyme/6.1.1.13 6.1.1.13]
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[dltA]]-[[dltB]]-[[dltC]]-[[dltD]]-[[dltE]]'' {{PubMed\|7797557}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dltC_3954987_3955223_1 dltC] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigD]] {{PubMed\|7797557}}, [[SigM]] {{PubMed\|18179421}}, [[SigX]] {{PubMed\|14762009}}
−
−	* '''Regulation:'''
−	** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed\|11948165}}
−	** repressed under conditions that trigger sporulation ([[Spo0A]]) {{PubMed\|7797557}}
−	** expression is reduced in a [[SigV]] mutant {{PubMed\|21926231}}
−
−	* '''Regulatory mechanism:'''
−	** activated by [[YvrHb]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16306698 PubMed]
−	** [[Spo0A]]: transcription repression {{PubMed\|7797557}}
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (minimal medium with glucose and ammonium): 1394 {{PubMed\|24696501}}
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 3427 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed> 24819367 </pubmed>~~
−
−	~~==Original publications==~~
−	~~<pubmed>14762009,15955059,26193422,7797557, 23980836 21856855,21926231 11434765</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 155: / Line 155: @@
 ==Original publications==
-<pubmed>14762009,15955059,26193422,7797557, 23980836 21856855,21926231</pubmed>
+<pubmed>14762009,15955059,26193422,7797557, 23980836 21856855,21926231 11434765</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 155: / Line 155: @@
 ==Original publications==
-<pubmed>14762009,15955059,,7797557, 23980836 21856855,21926231</pubmed>
+<pubmed>14762009,15955059,26193422,7797557, 23980836 21856855,21926231</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 152: / Line 152: @@
 =References=
 ==Reviews==
-<pubmed> 24024634 </pubmed>
+<pubmed> 24819367 </pubmed>
 ==Original publications==
 <pubmed>14762009,15955059,,7797557, 23980836 21856855,21926231</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 151: / Line 151: @@
 =References=
 <pubmed>14762009,15955059,,7797557, 23980836 21856855,21926231</pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 09:39, 17 April 2014
Line 129:		Line 129:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 1394 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 3427 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 15: / Line 15: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38520 dltC]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 3.621

@@ Line 60: / Line 60: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dltABCDE.html]
@@ Line 97: / Line 98: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dltC_3954987_3955223_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:dltC_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dltC_3954987_3955223_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:dltC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38520]]
 |-
 |}