CypC - Revision history

134.76.70.252 at 11:47, 8 April 2014

2014-04-08T11:47:57Z

134.76.38.147 at 12:53, 2 April 2014

2014-04-02T12:53:18Z

Jstuelk at 19:13, 15 September 2013

2013-09-15T19:13:06Z

Raphael2215: /* Database entries */

2013-07-10T08:46:03Z

‎Database entries

134.76.70.252 at 12:26, 16 May 2013

2013-05-16T12:26:40Z

134.76.70.252 at 09:21, 14 May 2013

2013-05-14T09:21:44Z

134.76.70.252 at 12:01, 13 May 2013

2013-05-13T12:01:56Z

Jstuelk at 13:40, 19 April 2013

2013-04-19T13:40:51Z

134.76.70.252 at 09:18, 8 August 2012

2012-08-08T09:18:28Z

134.76.70.252 at 08:19, 8 August 2012

2012-08-08T08:19:27Z

← Older revision		Revision as of 11:47, 8 April 2014
Line 1:		Line 1:
−	* '''Description:''' long chain-fatty acid beta-hydroxylating [[cytochrome P450]], H(2)O(2)-dependent, hydroxylates myristic acid to beta-hydroxymyristic acid, required for protection against paraquat stress <br/><br/>	+	{{#bank: CypC}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''cypC''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ybdT ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| fatty acid beta-hydroxylating [[cytochrome P450]], protection against paraquat stress~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| biosynthesis of beta-hydroxy fatty acid for lipopeptides~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02100 cypC]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 47 kDa, 6.468~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1251 bp, 417 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ybxI]]'', ''[[ybyB]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02100 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:cypC_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cypC_229525_230778_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:cypC_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02100]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[general stress proteins (controlled by SigB)]]}},~~
−	~~{{SubtiWiki category\|[[resistance against oxidative and electrophile stress]]}},~~
−	~~{{SubtiWiki category\|[[electron transport/ other]]}},~~
−	~~{{SubtiWiki category\|[[lipid metabolism/ other]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigB regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU02100
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU02100&redirect=T BSU02100]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cypC.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12729]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** hydroxylation of a long-chain fatty acid (e.g. myristic acid) at the alpha- and beta-positions using hydrogen peroxide as an oxidant {{PubMed\|12519760}}
−
−	* '''Protein family:''' [[cytochrome P450]] family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU02100&redirect=T BSU02100]
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2ZQJ 2ZQJ] [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1IZO 1IZO]{{PubMed\|12519760}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31440 O31440]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU02100]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''cypC'' (according to [http://dbtbs.hgc.jp/COG/prom/cypC.html DBTBS])
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cypC_229525_230778_1 cypC] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
−
−	* '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>12297285 11827534 11566026 17385817,11914497 10529095,12519760,15805528, 23586998 20697922,21673922 22582280</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 55: / Line 55: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cypC.html]
@@ Line 93: / Line 94: @@
 === Database entries ===
 * '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2ZQJ 2ZQJ] [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1IZO 1IZO]{{PubMed|12519760}}

@@ Line 1: / Line 1: @@
-* '''Description:''' long chain-fatty acid beta-hydroxylating [[cytochrome P450]], H(2)O(2)-dependent, hydroxylates myristic acid to beta-hydroxymyristic acid<br/><br/>
+* '''Description:''' long chain-fatty acid beta-hydroxylating [[cytochrome P450]], H(2)O(2)-dependent, hydroxylates myristic acid to beta-hydroxymyristic acid, required for protection against paraquat stress <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || fatty acid beta-hydroxylating [[cytochrome P450]]
+|style="background:#ABCDEF;" align="center"| '''Product''' || fatty acid beta-hydroxylating [[cytochrome P450]], protection against paraquat stress
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of beta-hydroxy fatty acid for lipopeptides
@@ Line 39: / Line 39: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[general stress proteins (controlled by SigB)]]}},
 {{SubtiWiki category|[[electron transport/ other]]}},
 {{SubtiWiki category|[[lipid metabolism/ other]]}}
@@ Line 136: / Line 137: @@
 =References=
-<pubmed>12297285 11827534 11566026 17385817,11914497 10529095,12519760,15805528, 23586998 20697922,21673922</pubmed>
+<pubmed>12297285 11827534 11566026 17385817,11914497 10529095,12519760,15805528, 23586998 20697922,21673922 22582280</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 93: / Line 93: @@
 === Database entries ===
-* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2ZQJ 2ZQJ] {{PubMed|12519760}}
+* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2ZQJ 2ZQJ] [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1IZO 1IZO]{{PubMed|12519760}}
 * '''UniProt:''' [http://www.uniprot.org/uniprot/O31440 O31440]

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cypC_229525_230778_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cypC_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cypC_229525_230778_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cypC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02100]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ybxI]]'', ''[[ybyB]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02100 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02100 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:cypC_context.gif]]

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 113: / Line 109: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cypC_229525_230778_1 cypC] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
+* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
 * '''Regulation:'''  induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
@@ Line 140: / Line 136: @@
 =References=
-'''Additional publications:''' {{PubMed|20697922,21673922}}
+<pubmed>12297285 11827534 11566026 17385817,11914497 10529095,12519760,15805528, 23586998 20697922,21673922</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of beta-hydroxy fatty acid for lipopeptides
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 47 kDa, 6.468