CshA - Revision history

134.76.70.252 at 09:27, 17 April 2014

2014-04-17T09:27:22Z

2014-04-02T13:01:56Z

2013-11-18T14:13:59Z

2013-11-17T18:54:20Z

‎References

2013-05-16T12:35:57Z

2013-05-14T09:31:28Z

2013-05-13T12:11:16Z

2013-01-03T14:35:07Z

‎References

2012-11-26T16:58:55Z

2012-11-26T16:48:12Z

@@ Line 61: / Line 61: @@
 * transcription profile resulting from ''[[rny]]'' depletion: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36877 GEO] {{PubMed|23175651}}
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 112: / Line 113: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04580 cshA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CshA CshA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CshA CshA]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 57 kDa, 9.89

@@ Line 171: / Line 171: @@
 =References=
-'''Additional publications:''' {{PubMed|20709848,21710567}}
+<pubmed>16352840,20572937 , 12399512 16861794, 23175651,21803996 20709848,21710567</pubmed>
 ==  CshA in other organisms ==
 <pubmed> 23229022  21764917</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[None Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cshA_expression.png|500px]]
+|colspan="2" |'''[None Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cshA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04580]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[murF]]'', ''[[ydbS]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04580 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04580 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04580 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04580 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ydbR_context.gif]]

@@ Line 57: / Line 57: @@
 * poor growth at low temperatures (16 to 20°C) {{PubMed|23175651}}
 * reduced number of [[ribosome]]s {{PubMed|23175651}}
+* no expression of the ''[[frlB]]-[[frlO]]-[[frlN]]-[[frlM]]-[[frlD]]'' operon {{PubMed|23175651}}
 === Database entries ===
@@ Line 63: / Line 65: @@
 * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12085]
 === Additional information===

@@ Line 56: / Line 56: @@
 ===Phenotypes of a mutant ===
 * poor growth at low temperatures (16 to 20°C) {{PubMed|23175651}}
-* reduced number of ribosomes {{PubMed|23175651}}
+* reduced number of [[ribosome]]s {{PubMed|23175651}}
 === Database entries ===
@@ Line 70: / Line 70: @@
 === Basic information/ Evolution ===
-* '''Catalyzed reaction/ biological activity:''' RNA helicase
+* '''Catalyzed reaction/ biological activity:'''
 * '''Protein family:''' helicase C-terminal domain (according to Swiss-Prot) [[DEAD-box RNA helicases|DEAD-box RNA helicase]]
@@ Line 100: / Line 102: @@
 ** [[DeaD]]-[[CshA]] {{PubMed|20572937}}
 ** [[RnpA]]-[[CshA]] {{PubMed|21764917}}
 * '''[[Localization]]:''' cytoplasma, colocalizes with the ribosomes [http://www.ncbi.nlm.nih.gov/sites/entrez/16352840 PubMed], cell membrane {{PubMed|20572937}}