CotU - Revision history

Jstuelk: /* Expression and regulation */

2015-04-06T13:50:06Z

‎Expression and regulation

2014-04-02T13:49:27Z

2013-11-18T14:17:05Z

2013-08-13T17:42:13Z

2013-05-16T13:28:04Z

2013-05-14T10:19:58Z

2013-05-13T12:55:36Z

2012-12-03T10:14:02Z

2012-08-07T10:06:25Z

2012-04-19T10:18:52Z

@@ Line 111: / Line 111: @@
 =Expression and regulation=
-* '''Operon:'''
+* '''Operon:''' ''cotU'' {{PubMed|22383849}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotU_1901117_1901377_-1 cotU] {{PubMed|22383849}}

@@ Line 56: / Line 56: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 96: / Line 97: @@
 === Database entries ===
 * '''Structure:'''

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 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17670 cotU]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CotU CotU]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotU CotU]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 6.315

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 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
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 = This gene is a member of the following [[regulons]] =
 {{SubtiWiki regulon|[[GerE regulon]]}},
-{{SubtiWiki regulon|[[GerR regulon]]}}
+{{SubtiWiki regulon|[[GerR regulon]]}},
 =The gene=
@@ Line 95: / Line 92: @@
 * '''[[Localization]]:'''
 ** the [[CotC]]-[[CotU]] complex assembles around the forming spore {{PubMed|18065538}}
@@ Line 146: / Line 144: @@
 =References=
-<pubmed>18065538,12562816, 20023017,20435725 </pubmed>
+<pubmed>18065538,12562816, 20023017,20435725 22171814</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotU_1901117_1901377_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cotU_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotU_1901117_1901377_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cotU_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17670]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncF]]'', ''[[ynzJ]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17670 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17670 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17670 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17670 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17670 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17670 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:ynzH_context.gif]]

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 258 bp, 86 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncF]]'', ''[[thyA]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncF]]'', ''[[ynzJ]]''
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13651&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || resistance of the spore
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CotU CotU]