CotG - Revision history

Jstuelk at 17:21, 8 February 2015

2015-02-08T17:21:10Z

134.76.38.147 at 14:59, 2 April 2014

2014-04-02T14:59:09Z

134.76.70.252 at 09:30, 12 November 2013

2013-11-12T09:30:13Z

Jstuelk at 16:31, 13 August 2013

2013-08-13T16:31:00Z

134.76.70.252 at 14:45, 16 May 2013

2013-05-16T14:45:44Z

134.76.70.252 at 11:27, 14 May 2013

2013-05-14T11:27:28Z

134.76.70.252 at 14:02, 13 May 2013

2013-05-13T14:02:04Z

134.76.70.252 at 16:43, 7 August 2012

2012-08-07T16:43:08Z

134.76.70.252 at 10:44, 23 April 2012

2012-04-23T10:44:34Z

134.76.70.252 at 07:57, 17 April 2012

2012-04-17T07:57:20Z

← Older revision		Revision as of 17:21, 8 February 2015
Line 1:		Line 1:
−	* '''Description:~~''' outer spore coat protein <br/><br/>~~	+	{{#bank: CotG}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''cotG''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| spore coat protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| resistance of the spore~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36070 cotG]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotG CotG]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 23 kDa, 10.673~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 585 bp, 195 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[cotH]]'', ''[[ywrF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36070 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:cotG_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotG_3717238_3717825_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:cotG_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36070]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[GerE regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[GerR regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigK regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU36070
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU36070&redirect=T BSU36070]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotG.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11017]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[CotB]]-[[CotG]] {{PubMed\|14762006}}
−
−	* '''[[Localization]]:'''
−	** outer spore coat, localization depends on [[CotE]] {{PubMed\|22171814}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU36070&redirect=T BSU36070]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P39801 P39801]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU36070]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[cotG]]'' {{PubMed\|7814326}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotG_3717238_3717825_1 cotG] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigE]] {{PubMed\|15383836}}, [[SigK]] {{PubMed\|15699190,7814326}}
−
−	* '''Regulation:'''
−	** expressed late during sporulation in the mother cell ([[SigE]], [[SigK]], [[GerE]]) {{PubMed\|15383836,15699190,7814326}}
−
−	* '''Regulatory mechanism:'''
−	** [[GerE]]: transcription activation {{PubMed\|7814326}}
−	** [[GerR]]: transcription activation {{PubMed\|15621419}}
−
−	* '''Additional information:''' the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>12884008,7814326,9573176,14762006, 15699190 15621419 22171814 21984783 15383836</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 57: / Line 57: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotG.html]
@@ Line 96: / Line 97: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36070 cotG]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CotG CotG]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotG CotG]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 23 kDa, 10.673

@@ Line 1: / Line 1: @@
-* '''Description:''' spore coat protein <br/><br/>
+* '''Description:''' outer spore coat protein <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 49: / Line 45: @@
 {{SubtiWiki regulon|[[GerE regulon]]}},
 {{SubtiWiki regulon|[[GerR regulon]]}},
 {{SubtiWiki regulon|[[SigK regulon]]}}
@@ Line 96: / Line 93: @@
 * '''[[Localization]]:'''
 === Database entries ===
@@ Line 114: / Line 112: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotG_3717238_3717825_1 cotG] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigK]] {{PubMed|15699190,7814326}}
+* '''Sigma factor:''' [[SigE]] {{PubMed|15383836}}, [[SigK]] {{PubMed|15699190,7814326}}
 * '''Regulation:'''
-** expressed late during sporulation in the mother cell ([[SigK]], [[GerE]]) {{PubMed|15699190,7814326}}
+** expressed late during sporulation in the mother cell ([[SigE]], [[SigK]], [[GerE]]) {{PubMed|15383836,15699190,7814326}}
 * '''Regulatory mechanism:'''
@@ Line 144: / Line 142: @@
 =References=
-'''Additional publications:''' {{PubMed|21984783}}
+<pubmed>12884008,7814326,9573176,14762006, 15699190 15621419 22171814 21984783 15383836</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotG_3717238_3717825_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cotG_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotG_3717238_3717825_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cotG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36070]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotH]]'', ''[[ywrF]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36070 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36070 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:cotG_context.gif]]

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || resistance of the spore
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CotG CotG]

@@ Line 102: / Line 102: @@
 * '''Operon:''' ''[[cotG]]'' {{PubMed|7814326}}
-* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190,7814326}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotG_3717238_3717825_1 cotG] {{PubMed|22383849}}
 * '''Regulation:'''