CotE - Revision history

Jstuelk: /* Original publications */

2015-04-17T16:55:27Z

‎Original publications

Jstuelk at 09:30, 29 September 2014

2014-09-29T09:30:23Z

134.76.70.252 at 10:07, 17 April 2014

2014-04-17T10:07:40Z

134.76.38.147 at 13:47, 2 April 2014

2014-04-02T13:47:17Z

Jstuelk at 18:59, 4 January 2014

2014-01-04T18:59:47Z

134.76.70.252 at 16:20, 11 November 2013

2013-11-11T16:20:53Z

Jstuelk at 11:34, 4 October 2013

2013-10-04T11:34:07Z

Jstuelk: /* References */

2013-08-13T17:56:55Z

‎References

Jstuelk at 17:54, 13 August 2013

2013-08-13T17:54:30Z

Jstuelk: /* Extended information on the protein */

2013-08-13T15:06:11Z

‎Extended information on the protein

← Older revision		Revision as of 16:55, 17 April 2015
Line 1:		Line 1:
−	* '''Description:~~''' outer spore coat morphogenetic protein, controls the assembly of the outer spore coat layer <br/><br/>~~	+	{{#bank: CotE}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''cotE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| spore coat morphogenetic protein~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| assembly of the outer spore coat~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17030 cotE]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotE CotE]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 20 kDa, 4.139~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 543 bp, 181 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ymcA]]'', ''[[mutS]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17030 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:cotE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotE_1775067_1775612_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:cotE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17030]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigK regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[GerE regulon]]}}~~
−
−	~~= CotE-dependent proteins of the outer spore coat =~~
−	* [[CotA]], [[CotB]], [[CotG]], [[CotM]], [[CotO]], [[CotQ]], [[CotS]], [[CotU]], [[CotW]], [[CotZ]], [[Tgl]], [[YknT]], [[YlbD]], [[YncD]], [[YtxO]] {{PubMed\|22171814}}
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU17030
−
−	~~===Phenotypes of a mutant ===~~
−	* mis-assembly of the outer spore coat {{PubMed\|22171814}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17030&redirect=T BSU17030]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10494]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** assembly of the [[CotC]]-[[CotU]] complex {{PubMed\|20023017,18065538}}
−
−	* '''Protein family:''' cotE family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** homotypic interaction [http://www.ncbi.nlm.nih.gov/sites/entrez/19304857 PubMed]
−	** [[CotE]]-[[CotC]] {{PubMed\|20023017}}
−	** [[CotE]]-[[CotU]] {{PubMed\|20023017}}
−	** [[SpoVID]]-[[CotE]] {{PubMed\|23178679,22773792}}
−
−	* '''[[Localization]]:'''
−	** encircles the forespore with a biased accumulation on the mother cell-proximal face of the forespore {{PubMed\|23267091,22463703}}
−	** outer spore coat, localization depends on [[SpoIVA]] {{PubMed\|22773792,22171814}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17030&redirect=T BSU17030]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P14016 P14016]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17030]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[cotE]]'' {{PubMed\|8760914}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotE_1775067_1775612_1 cotE] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigE]] {{PubMed\|15699190,1691789}}, [[SigK]] {{PubMed\|1691789}}
−
−	* '''Regulation:'''
−	** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
−	** expressed during sporulation in the mother cell ([[SigE]], [[SigK]], [[GerE]]) {{PubMed\|1691789,15383836}}
−
−	* '''Regulatory mechanism:'''
−	** [[GerE]]: transcription repression {{PubMed\|15383836}}
−
−	* '''Additional information:'''
−	** number of protein molecules per cell (complex medium with amino acids, without glucose): 511 {{PubMed\|24696501}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−	** 1S105 ( ''cotE''::''cat''), {{PubMed\|3139490}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1S105&Search=1S105 BGSC]
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Arthur Aronson]], Purdue University, West Lafayette, USA [http://wwwdev.gradschool.purdue.edu/PULSe/faculty.cfm?fid=5&range=0 homepage]~~
−
−	~~[[Adriano Henriques]], Lisbon, Portugal [http://www.itqb.unl.pt/research/biology/microbial-development homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed> 22192522 23202530</pubmed>~~
−	~~== Original publications ==~~
−	<pubmed>8748030,17720779,10559171 8760914 15699190 7592342,3139490, 8299942,1691789, 12644503, 17172339,19304857,11737650 ,12107147, 20023017 18065538 22773792 15383836 22171814 23064347 23178679 23267091 22463703,21821751 24086406 25259857 </pubmed>
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 160: / Line 160: @@
 <pubmed> 22192522 23202530</pubmed>
 == Original publications ==
-<pubmed>8748030,17720779,10559171 8760914 15699190 7592342,3139490, 8299942,1691789, 12644503, 17172339,19304857,11737650 ,12107147, 20023017 18065538 22773792 15383836 22171814 23064347 23178679 23267091 22463703,21821751 24086406 </pubmed>
+<pubmed>8748030,17720779,10559171 8760914 15699190 7592342,3139490, 8299942,1691789, 12644503, 17172339,19304857,11737650 ,12107147, 20023017 18065538 22773792 15383836 22171814 23064347 23178679 23267091 22463703,21821751 24086406 25259857 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision		Revision as of 10:07, 17 April 2014
Line 131:		Line 131:

	* '''Additional information:'''		* '''Additional information:'''
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 511 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 60: / Line 60: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotE.html]
@@ Line 102: / Line 103: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 83: / Line 83: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 155: / Line 155: @@
 =References=
 == Reviews ==
-<pubmed> 22192522 </pubmed>
+<pubmed> 22192522 23202530</pubmed>
 == Original publications ==
 <pubmed>8748030,17720779,10559171 8760914 15699190 7592342,3139490, 8299942,1691789, 12644503, 17172339,19304857,11737650 ,12107147, 20023017 18065538 22773792 15383836 22171814 23064347 23178679 23267091 22463703,21821751 24086406 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17030 cotE]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CotE CotE]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CotE CotE]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 4.139

@@ Line 46: / Line 46: @@
 {{SubtiWiki regulon|[[SigK regulon]]}},
 {{SubtiWiki regulon|[[GerE regulon]]}}
 =The gene=

@@ Line 96: / Line 96: @@
 * '''[[Localization]]:'''
 ** encircles the forespore with a biased accumulation on the mother cell-proximal face of the forespore  {{PubMed|23267091,22463703}}
-** outer spore coat {{PubMed|22773792,22171814}}
+** outer spore coat, localization depends on [[SpoIVA]] {{PubMed|22773792,22171814}}
 === Database entries ===