ConE - Revision history

Jstuelk at 16:47, 28 May 2015

2015-05-28T16:47:08Z

Jstuelk at 16:43, 28 May 2015

2015-05-28T16:43:14Z

Jstuelk at 16:42, 28 May 2015

2015-05-28T16:42:17Z

Jstuelk at 16:42, 28 May 2015

2015-05-28T16:42:07Z

Jstuelk at 16:39, 28 May 2015

2015-05-28T16:39:47Z

Jstuelk at 16:20, 28 May 2015

2015-05-28T16:20:44Z

Jstuelk at 16:19, 28 May 2015

2015-05-28T16:19:43Z

Jstuelk at 16:05, 28 May 2015

2015-05-28T16:05:02Z

134.76.38.147 at 13:03, 2 April 2014

2014-04-02T13:03:24Z

Jstuelk at 09:04, 19 February 2014

2014-02-19T09:04:18Z

← Older revision		Revision as of 16:47, 28 May 2015
Line 1:		Line 1:
−	* '''Description:~~''' ATPase, required for conjugation of ICE''Bs1'', part of the type IV secretion system for DNA transfer <br/><br/>~~	+	{{#bank: ConE}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''conE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yddE ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| ATPase, part of the type IV secretion system for DNA transfer~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| conjugative transfer of ICEBs1~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04940 conE]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 96 kDa, 5.511~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 2493 bp, 831 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[conD]]'', ''[[yddF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04940 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04940 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04940 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yddE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yddE_538836_541229_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:conE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04940]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[mobile genetic elements]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU04940
−
−	~~===Phenotypes of a mutant ===~~
−	* Defective for conjugal transfer of ICE''Bs1''
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04940&redirect=T BSU04940]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12112]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' required for conjugative transfer of ICEBs1, putative ATPase {{PubMed\|19734305}}
−
−	* '''Protein family:''' HerA/FtsK Superfamily of ATPases including the well-studied proteins FtsK, SpoIIIE, VirB4, and VirD4
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** peripheral membrane protein (via [[ConB]]), located at the cell poles {{PubMed\|19734305}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU04940&redirect=T BSU04940]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P96642 P96642]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU04940]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yddE_538836_541229_1 conE] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−	~~[[Melanie Barker Berkmen]], Suffolk University, Boston, MA [http://openwetware.org/wiki/Berkmen Homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 19734305 26013486</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 1: / Line 1: @@
-* '''Description:''' required for conjugation of ICE''Bs1'', part of the type IV secretion system for DNA transfer  <br/><br/>
+* '''Description:''' ATPase, required for conjugation of ICE''Bs1'', part of the type IV secretion system for DNA transfer  <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || part of the type IV secretion system for DNA transfer
+|style="background:#ABCDEF;" align="center"| '''Product''' || ATPase, part of the type IV secretion system for DNA transfer
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || conjugative transfer of ICEBs1

← Older revision		Revision as of 16:42, 28 May 2015
Line 1:		Line 1:
	* '''Description:''' required for conjugation of ICE''Bs1'', part of the type IV secretion system for DNA transfer <br/><br/>		* '''Description:''' required for conjugation of ICE''Bs1'', part of the type IV secretion system for DNA transfer <br/><br/>
−

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 89: / Line 89: @@
 * '''[[Localization]]:'''
-** Located at the cell poles, in close association with the membrane {{PubMed|19734305}}
+** peripheral membrane protein (via [[ConB]]), located at the cell poles {{PubMed|19734305}}
 === Database entries ===
@@ Line 138: / Line 138: @@
 =References=
-<pubmed> 19734305 </pubmed>
+<pubmed> 19734305 26013486</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2493 bp, 831 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yddD]]'', ''[[yddF]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[conD]]'', ''[[yddF]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04940 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04940 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04940 DNA_with_flanks]

@@ Line 39: / Line 39: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[mobile genetic elements]]}}
+{{SubtiWiki category|[[mobile genetic elements]]}},
 = This gene is a member of the following [[regulons]] =
@@ Line 87: / Line 89: @@
 * '''[[Localization]]:'''
-** Located at the cell poles, in close association with the membrane
+** Located at the cell poles, in close association with the membrane {{PubMed|19734305}}
 === Database entries ===

@@ Line 51: / Line 51: @@
 ===Phenotypes of a mutant ===
-Defective for conjugal transfer of ICE''Bs1''
+* Defective for conjugal transfer of ICE''Bs1''
 === Database entries ===

@@ Line 53: / Line 53: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 88: / Line 89: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 63: / Line 59: @@
 === Additional information===
 =The protein=
@@ Line 81: / Line 74: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 112: / Line 105: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yddE_538836_541229_1 conE] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''