ComP - Revision history

Jstuelk: /* Original Publications */

2015-03-13T15:41:27Z

‎Original Publications

Jstuelk at 08:08, 5 May 2014

2014-05-05T08:08:42Z

134.76.38.147 at 14:38, 2 April 2014

2014-04-02T14:38:44Z

Jstuelk at 12:17, 17 January 2014

2014-01-17T12:17:20Z

Jstuelk at 14:36, 6 December 2013

2013-12-06T14:36:34Z

Jstuelk: /* Phenotypes of a mutant */

2013-12-04T20:18:20Z

‎Phenotypes of a mutant

Jstuelk at 20:05, 4 December 2013

2013-12-04T20:05:07Z

134.76.70.252 at 09:16, 12 November 2013

2013-11-12T09:16:28Z

134.76.70.252 at 14:27, 16 May 2013

2013-05-16T14:27:34Z

134.76.70.252 at 11:09, 14 May 2013

2013-05-14T11:09:23Z

← Older revision		Revision as of 15:41, 13 March 2015
Line 1:		Line 1:
−	* '''Description:~~''' [[two-component systems\|two-component]] sensor kinase, detects extracellular [[ComX]] <br/><br/>~~	+	{{#bank: ComP}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''comP''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[two-component systems\|two-component]] sensor kinase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| regulation of [[genetic competence]] and [[quorum sensing]]~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31690 comP]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ComP ComP]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 89 kDa, 7.997~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 2307 bp, 769 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[comA]]'', ''[[comX]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31690 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31690 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31690 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:comP_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:comP_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31690]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[genetic competence]]}},~~
−	~~{{SubtiWiki category\|[[protein modification]]}},~~
−	~~{{SubtiWiki category\|[[transcription factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[quorum sensing]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}},~~
−	~~{{SubtiWiki category\|[[phosphoproteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU31690
−
−	~~===Phenotypes of a mutant ===~~
−	* the mutation suppresses the mucoid phenotype of ''[[motA]]'' or ''[[motB]]'' mutants due to loss of [[DegU]] phosphorylation and concomitant reduced expression of the ''[[capB]]-[[capC]]-[[capA]]-[[capE]]'' operon {{PubMed\|24296669}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31690&redirect=T BSU31690]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/comP.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10380]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' autophosphorylation, phosphorylation of [[ComA]]
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:''' eight transmembrane segments
−
−	* '''Modification:''' autophosphorylation on a His residue
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:''' [[ComX]] (extracellular)
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[ComP]]-[[ComA]]
−
−	* '''[[Localization]]:''' cell membrane {{PubMed\|18763711}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31690&redirect=T BSU31690]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/Q99027 Q99027]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31690]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''comP'' {{PubMed\|9274030}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 comP] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed>12576575 </pubmed>~~
−	~~==Original Publications==~~
−	~~<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 24130811 24425772 24788106 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 146: / Line 146: @@
 <pubmed>12576575 </pubmed>
 ==Original Publications==
-<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 24130811 24425772 </pubmed>
+<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 24130811 24425772 24788106 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 62: / Line 62: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/comP.html]
@@ Line 97: / Line 98: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 68: / Line 68: @@
 === Additional information===
 =The protein=
@@ Line 145: / Line 144: @@
 <pubmed>12576575 </pubmed>
 ==Original Publications==
-<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 24130811 </pubmed>
+<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 24130811 24425772 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 145: / Line 145: @@
 <pubmed>12576575 </pubmed>
 ==Original Publications==
-<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 </pubmed>
+<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 24130811 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 59: / Line 59: @@
 ===Phenotypes of a mutant ===
-* the mutation suppresses the mucoid phenotype of ''[[motA]]'' or ''[[motB]]'' mutants due to loss of [[DegU]] phosphorylation and concomitant reduced expression of the ''[[pgsB]]-[[pgsC]]-[[pgsA]]'' operon {{PubMed|24296669}}
+* the mutation suppresses the mucoid phenotype of ''[[motA]]'' or ''[[motB]]'' mutants due to loss of [[DegU]] phosphorylation and concomitant reduced expression of the ''[[capB]]-[[capC]]-[[capA]]-[[capE]]'' operon {{PubMed|24296669}}
 === Database entries ===

@@ Line 39: / Line 39: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
-<br/><br/><br/><br/>
+<br/><br/>
 = [[Categories]] containing this gene/protein =
@@ Line 63: / Line 59: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 71: / Line 68: @@
 === Additional information===
@@ Line 89: / Line 84: @@
 * '''Kinetic information:'''
-* '''Domains:''' eight transmembrane segments
+* '''[[Domains]]:''' eight transmembrane segments
 * '''Modification:''' autophosphorylation on a His residue
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:''' [[ComX]] (extracellular)
@@ Line 120: / Line 115: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 comP] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''
@@ Line 150: / Line 145: @@
 <pubmed>12576575 </pubmed>
 ==Original Publications==
-<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711  </pubmed>
+<pubmed>11133937,8643670,12067344,10094672,10419951,2116363,9274030 18763711 24296669 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31690 comP]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ComP ComP]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ComP ComP]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 89 kDa, 7.997

@@ Line 31: / Line 31: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:comP_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comP_3253529_3255838_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:comP_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31690]]
 |-
 |}

@@ Line 24: / Line 24: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comA]]'', ''[[comX]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31690 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31690 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31690 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31690 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31690 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31690 DNA_with_flanks]
 |-
 |-