ClpC - Revision history

Jstuelk: /* Biological materials */

2015-08-21T12:42:04Z

‎Biological materials

Show changes

Jstuelk: /* Biological materials */

2015-06-16T10:57:37Z

‎Biological materials

Jstuelk at 09:05, 23 January 2015

2015-01-23T09:05:20Z

134.76.70.252 at 14:04, 17 April 2014

2014-04-17T14:04:40Z

134.76.70.252 at 09:37, 17 April 2014

2014-04-17T09:37:48Z

134.76.38.147 at 12:48, 2 April 2014

2014-04-02T12:48:09Z

134.76.70.252 at 09:59, 7 January 2014

2014-01-07T09:59:41Z

Jstuelk at 07:30, 16 December 2013

2013-12-16T07:30:45Z

134.76.70.252 at 14:59, 11 November 2013

2013-11-11T14:59:49Z

Jstuelk at 15:53, 14 June 2013

2013-06-14T15:53:18Z

@@ Line 161: / Line 161: @@
 * '''two-hybrid system:'''
-* '''Antibody:'''
+* '''Antibody:''' available in [[Ulf Gerth]]'s and [[Jörg Stülke]]'s labs
 =Labs working on this gene/protein=

@@ Line 149: / Line 149: @@
 =Biological materials =
-* '''Mutant:''' ''[[clpC]]::tet'' available from the [http://subtiwiki.uni-goettingen.de/wiki/index.php/Leendert_Hamoen Hamoen] Lab
+* '''Mutant:'''
 * '''Expression vector:'''
@@ Line 162: / Line 164: @@
 =Labs working on this gene/protein=
-[[Leendert Hamoen]], Newcastle University, UK [http://www.ncl.ac.uk/camb/staff/profile/l.hamoen homepage]
+* [[Leendert Hamoen]], Newcastle University, UK [http://www.ncl.ac.uk/camb/staff/profile/l.hamoen homepage]
+* [[Kürsad Turgay]], Freie Universität Berlin, Germany [http://www.biologie.fu-berlin.de/en/microbio/mibi-turg/index.html homepage]
 =Your additional remarks=
@@ Line 172: / Line 173: @@
 <pubmed> 17302811 23375660 23479438,19609260,19781636</pubmed>
 ==Original Publications==
-<pubmed>9987115,8016067,9000055,12923101,10447896,9141693,2113920,16497325,19226326,8793870,10809708,14679237,17560370,11684022,8195092,11722737,11914365,12028382,18689476,19361434,9890793, 19767395 ,9987115, 11544224, 17981983, 14763982, 8016066 19361434 18689473 20070525 20923420 20852588  22517742  21622759 21368759 21821766 23595989 18786145,16525504,17380125, 16163393,12598648 24263382</pubmed>
+<pubmed>9987115,8016067,9000055,12923101,10447896,9141693,2113920,16497325,19226326,8793870,10809708,14679237,17560370,11684022,8195092,11722737,11914365,12028382,18689476,19361434,9890793, 19767395 ,9987115, 11544224, 17981983, 14763982, 8016066 19361434 18689473 20070525 20923420 20852588  22517742  21622759 21368759 21821766 23595989 18786145,16525504,17380125, 16163393,12598648 24263382 25610436</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 144: / Line 144: @@
 ** number of protein molecules per cell (minimal medium with glucose and ammonium): 1157 {{PubMed|24696501}}
 ** number of protein molecules per cell (complex medium with amino acids, without glucose): 2624 {{PubMed|24696501}}
 =Biological materials =
 * '''Mutant:''' ''[[clpC]]::tet'' available from the [http://subtiwiki.uni-goettingen.de/wiki/index.php/Leendert_Hamoen Hamoen] Lab

← Older revision		Revision as of 09:37, 17 April 2014
Line 142:		Line 142:

	* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]		* '''Additional information:''' subject to Clp-dependent proteolysis upon glucose starvation [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=+17981983 PubMed]
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 1157 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 2624 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

@@ Line 62: / Line 62: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ctsR-mcsAB-clpC-radA-yacK.html]
@@ Line 108: / Line 109: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 18: / Line 18: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ClpC ClpC]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=clpC clpC]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 89 kDa, 5.746

@@ Line 88: / Line 88: @@
 * '''Kinetic information:'''
-* '''Domains:''' AAA-ATPase [http://pfam.sanger.ac.uk/family?acc=PF07724 PFAM]
+* '''[[Domains]]:''' AAA-ATPase [http://pfam.sanger.ac.uk/family?acc=PF07724 PFAM]
 * '''Modification:'''
 ** phosphorylated on Arg-5 and Arg-254 {{PubMed|22517742}}
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 166: / Line 166: @@
 <pubmed> 17302811 23375660 23479438,19609260,19781636</pubmed>
 ==Original Publications==
-<pubmed>9987115,8016067,9000055,12923101,10447896,9141693,2113920,16497325,19226326,8793870,10809708,14679237,17560370,11684022,8195092,11722737,11914365,12028382,18689476,19361434,9890793, 19767395 ,9987115, 11544224, 17981983, 14763982, 8016066 19361434 18689473 20070525 20923420 20852588  22517742  21622759 21368759 21821766 23595989 18786145,16525504,17380125, 16163393,12598648</pubmed>
+<pubmed>9987115,8016067,9000055,12923101,10447896,9141693,2113920,16497325,19226326,8793870,10809708,14679237,17560370,11684022,8195092,11722737,11914365,12028382,18689476,19361434,9890793, 19767395 ,9987115, 11544224, 17981983, 14763982, 8016066 19361434 18689473 20070525 20923420 20852588  22517742  21622759 21368759 21821766 23595989 18786145,16525504,17380125, 16163393,12598648 24263382</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00860 clpC]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/ClpC ClpC]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ClpC ClpC]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''

@@ Line 111: / Line 111: @@
 * '''Structure:'''
 ** [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=2K77 2K77] (N-terminal domain)
-** [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3PXG 3PXG] (the [[MecA]]-[[ClpC]] complex) {{PubMed|21368759}}
+** [http://www.rcsb.org/pdb/explore/explore.do?pdbId=3PXG 3PXG], [http://www.rcsb.org/pdb/explore/explore.do?pdbId= 3J3U 3J3U] (the [[MecA]]-[[ClpC]] complex) {{PubMed|23595989}}
 * '''UniProt:''' [http://www.uniprot.org/uniprot/P37571 P37571]
@@ Line 164: / Line 164: @@
 =References=
 ==Reviews==
-'''Additional reviews:''' {{PubMed|23479438,19609260,19781636}}
+<pubmed> 17302811 23375660 23479438,19609260,19781636</pubmed>
 ==Original Publications==
-'''Additional publications:''' {{PubMed|18786145,16525504,17380125,16163393,12598648}}
+<pubmed>9987115,8016067,9000055,12923101,10447896,9141693,2113920,16497325,19226326,8793870,10809708,14679237,17560370,11684022,8195092,11722737,11914365,12028382,18689476,19361434,9890793, 19767395 ,9987115, 11544224, 17981983, 14763982, 8016066 19361434 18689473 20070525 20923420 20852588  22517742  21622759 21368759 21821766 23595989 18786145,16525504,17380125, 16163393,12598648</pubmed>
 [[Category:Protein-coding genes]]