CcpA - Revision history

Jstuelk: /* Positive regulation of gene expression by CcpA */

2014-09-19T12:24:35Z

‎Positive regulation of gene expression by CcpA

2014-04-17T14:04:09Z

2014-04-17T13:44:08Z

Reverted edits by 134.76.70.252 (talk) to last revision by 134.76.38.147

2014-04-17T13:33:45Z

2014-04-17T09:43:20Z

2014-04-02T14:32:08Z

2014-01-07T11:28:42Z

2013-11-12T09:08:55Z

2013-09-03T08:16:12Z

‎Biological materials

2013-07-30T13:34:08Z

‎References

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 * '''Additional information:''' there are about 3.000 molecules of CcpA per cell [http://www.ncbi.nlm.nih.gov/sites/entrez/8000527 PubMed], this corresponds to a concentration of 3 myM  (according to {{PubMed|20408793}})
 =Biological materials =
 * '''Mutant:'''
 ** QB5407 (spc) {{PubMed|10941796}}, available in [[Jörg Stülke]]'s lab

@@ Line 133: / Line 133: @@
 * '''Additional information:''' there are about 3.000 molecules of CcpA per cell [http://www.ncbi.nlm.nih.gov/sites/entrez/8000527 PubMed], this corresponds to a concentration of 3 myM  (according to {{PubMed|20408793}})
-** number of protein molecules per cell (minimal medium with glucose and ammonium, late stationary phase after glucose exhaustion): 476 {{PubMed|21395229}}
+=Biological materials =
 * '''Mutant:'''
 ** QB5407 (spc) {{PubMed|10941796}}, available in [[Jörg Stülke]]'s lab

@@ Line 135: / Line 135: @@
 ** number of protein molecules per cell (minimal medium with glucose and ammonium): 457 {{PubMed|24696501}}
 ** number of protein molecules per cell (complex medium with amino acids, without glucose): 1366 {{PubMed|24696501}}
 =Biological materials =
 * '''Mutant:'''
 ** QB5407 (spc) {{PubMed|10941796}}, available in [[Jörg Stülke]]'s lab

← Older revision		Revision as of 09:43, 17 April 2014
Line 133:		Line 133:

	* '''Additional information:''' there are about 3.000 molecules of CcpA per cell [http://www.ncbi.nlm.nih.gov/sites/entrez/8000527 PubMed], this corresponds to a concentration of 3 myM (according to {{PubMed\|20408793}})		* '''Additional information:''' there are about 3.000 molecules of CcpA per cell [http://www.ncbi.nlm.nih.gov/sites/entrez/8000527 PubMed], this corresponds to a concentration of 3 myM (according to {{PubMed\|20408793}})
		+	** number of protein molecules per cell (minimal medium with glucose and ammonium): 457 {{PubMed\|24696501}}
		+	** number of protein molecules per cell (complex medium with amino acids, without glucose): 1366 {{PubMed\|24696501}}

	=Biological materials =		=Biological materials =

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 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ccpA-motPS.html]
@@ Line 105: / Line 106: @@
 === Database entries ===
 * '''Structure:'''

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 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CcpA CcpA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/nucleosides_catabolism.html Nucleoside catabolism], [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)], [http://subtiwiki.uni-goettingen.de/pathways/ile_val_leu.html Ile, Leu, Val],<br/>[http://subtiwiki.uni-goettingen.de/pathways/histidine.html His], [http://subtiwiki.uni-goettingen.de/pathways/CoA_synthesis.html Coenzyme A], [http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=ccpA ccpA]'''
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36,8 kDa, 5.06

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU29740 ccpA]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/CcpA CcpA]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=CcpA CcpA]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/nucleosides_catabolism.html Nucleoside catabolism], [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)], [http://subtiwiki.uni-goettingen.de/pathways/ile_val_leu.html Ile, Leu, Val],<br/>[http://subtiwiki.uni-goettingen.de/pathways/histidine.html His], [http://subtiwiki.uni-goettingen.de/pathways/CoA_synthesis.html Coenzyme A], [http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''

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 * '''Mutant:'''
-** QB5407 (spc), available in [[Jörg Stülke]]'s lab
+** QB5407 (spc) {{PubMed|10941796}}, available in [[Jörg Stülke]]'s lab
-** GP302 (erm), available in [[Jörg Stülke]]'s lab
+** GP302 (erm) {{PubMed|12123463}}, available in [[Jörg Stülke]]'s lab
-** GP300 (an in frame deletion of ''[[ccpA]]''), available in [[Jörg Stülke]]'s lab
+** GP300 (an in frame deletion of ''[[ccpA]]'') {{PubMed|11557150}}, available in [[Jörg Stülke]]'s lab
 ** WH649 (aphA3), available in [[Gerald Seidel]]'s lab

@@ Line 167: / Line 167: @@
 ==General and physiological studies==
-'''Additional publications:''' {{PubMed|22512862}}
+<pubmed>1904524 ,10941796 ,12123463,8000527, 18757537,16547058,14523131 22001508 22512862</pubmed>
 ==Global analyses (proteome, transcriptome, ChIP-chip)==
-'''Additional publications:''' {{PubMed|22900538}}
+<pubmed>12850135 ,11251851,10559165, 11160890,17183215 22383848 22900538</pubmed>
 ==Repression of target genes by CcpA==
-'''Additional publications:''' {{PubMed|21398533}}
+<pubmed>15150224 ,16166551 ,11929549 , 7913927 ,17827291 ,11985717 ,12100558,7592486 16825793 16491025  21398533</pubmed>
 ==Positive regulation of gene expression by CcpA==