CatE - Revision history

134.76.38.147 at 13:13, 2 April 2014

2014-04-02T13:13:44Z

134.76.70.252 at 12:48, 16 May 2013

2013-05-16T12:48:12Z

134.76.70.252 at 09:44, 14 May 2013

2013-05-14T09:44:11Z

134.76.70.252 at 12:22, 13 May 2013

2013-05-13T12:22:57Z

Raphael2215 at 10:39, 13 August 2012

2012-08-13T10:39:04Z

134.76.70.252 at 16:03, 6 August 2012

2012-08-06T16:03:00Z

134.76.70.252 at 16:10, 18 April 2012

2012-04-18T16:10:37Z

134.76.70.252 at 16:20, 12 April 2012

2012-04-12T16:20:05Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-01-27T20:39:36Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

134.76.70.252 at 15:07, 24 January 2012

2012-01-24T15:07:53Z

← Older revision		Revision as of 13:13, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' catechol 2,3-dioxygenase <br/><br/>	+	{{#bank: CatE}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''catE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yfiE''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| catechol 2,3-dioxygenase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| essential for the viability in the presence of catechol~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08240 catE]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 31 kDa, 5.302~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 855 bp, 285 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[catD]]'', ''[[yfiF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08240 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yfiE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:catE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08240]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[resistance against oxidative and electrophile stress]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CatR regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[YodB regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU08240
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfiDE.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11852]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54721 P54721]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU08240]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[catD]]-[[catE]]'' {{PubMed\|16872404}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 catE] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigA]] {{PubMed\|20639328}}
−
−	* '''Regulation:'''
−	** strong induction by diamide and quinones (such as catechol) ([[YodB]], [[CatR]]) {{PubMed\|16872404,20639328}}
−
−	* '''Regulatory mechanism:'''
−	** [[YodB]]: transcription repression {{PubMed\|20639328}}
−	** [[CatR]]: transcription repression {{PubMed\|20639328}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>17407181,16872404 , 20639328</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 28: / Line 28: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:catE_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:catE_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08240]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[catD]]'', ''[[yfiF]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08240 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08240 DNA_with_flanks]
 |-
 |-

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || essential for the viability in the presence of catechol
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU08240 catE]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08240 catE]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 5.302
@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[catD]]'', ''[[yfiF]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12653&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08240 Advanced_DNA]
 |-
 |-

@@ Line 1: / Line 1: @@
+* '''Description:''' catechol 2,3-dioxygenase <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-

@@ Line 100: / Line 100: @@
 * '''Operon:''' ''[[catD]]-[[catE]]'' {{PubMed|16872404}}
-* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|20639328}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 catE] {{PubMed|22383849}}
 * '''Regulation:'''

← Older revision		Revision as of 20:39, 27 January 2012
Line 45:		Line 45:

	* '''Locus tag:''' BSU08240		* '''Locus tag:''' BSU08240
−
−	~~[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 Expression]~~

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===

← Older revision		Revision as of 15:07, 24 January 2012
Line 45:		Line 45:

	* '''Locus tag:''' BSU08240		* '''Locus tag:''' BSU08240
		+
		+	[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=catE_898010_898867_1 Expression]

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===