AppA - Revision history

Jstuelk: Undo revision 90651 by Umaeder (Talk)

2009-06-11T11:50:39Z

Undo revision 90651 by Umaeder (Talk)

Umaeder at 11:49, 11 June 2009

2009-06-11T11:49:05Z

Sroppel: Redirected page to AppA/1

2009-06-06T11:58:21Z

Redirected page to AppA/1

Sroppel: Replaced content with '#REDIRECT[appA/1]'

2009-06-06T11:58:03Z

Replaced content with '#REDIRECT[appA/1]'

Sroppel at 11:19, 3 June 2009

2009-06-03T11:19:47Z

Sroppel at 14:25, 2 June 2009

2009-06-02T14:25:08Z

Sroppel at 21:53, 13 May 2009

2009-05-13T21:53:20Z

Sroppel at 23:11, 7 May 2009

2009-05-07T23:11:21Z

Sroppel at 22:10, 5 May 2009

2009-05-05T22:10:23Z

Sroppel at 17:10, 4 May 2009

2009-05-04T17:10:14Z

← Older revision		Revision as of 11:50, 11 June 2009
Line 1:		Line 1:
−	* '''Description:''' oligopeptide ABC transporter (ATP-binding protein) <br/><br/>	+	#REDIRECT[[appA/1]]
−
−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''appF''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Product''' \|\| oligopeptide ABC transporter (ATP-binding protein))~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of oligopeptides~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 36 kDa, 9.645~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 987 bp, 329 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[appD]]'', ''~~[[appA~~]]''~~
−	\|-
−	~~\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http:~~/~~/srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB12994]+-newId sequences~~] ~~<br/> (Barbe ''et al.'', 2009)'''~~
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:appF_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−
−	~~<br/><br/>~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU11370
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11086]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' ABC transporter domain (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:'''
−
−	* '''Localization:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P42065 P42065]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU11370]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[appD]]-[[appF]]-[[appA]]-[[appB]]-[[appC]]''
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:''' repressed by [[CodY]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
−	** repressed during growth in the presence of branched chain amino acids ([[CodY]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
−
−	* '''Regulatory mechanism:''' [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
−	** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
−	** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed~~]

← Older revision		Revision as of 11:49, 11 June 2009
Line 1:		Line 1:
−	#~~REDIRECT~~[[appA/1]]	+	* '''Description:''' oligopeptide ABC transporter (ATP-binding protein) <br/><br/>
		+
		+	{\| align="right" border="1" cellpadding="2"
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Gene name'''
		+	\|''appF''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| oligopeptide ABC transporter (ATP-binding protein))
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of oligopeptides
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 36 kDa, 9.645
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 987 bp, 329 aa
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[appD]]'', ''[[appA]]''
		+	\|-
		+	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB12994]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
		+	\|-
		+	\|-
		+	\|-
		+	\|colspan="2" \| '''Genetic context''' <br/> [[Image:appF_context.gif]]
		+	<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
		+	\|-
		+	\|}
		+
		+	__TOC__
		+
		+	<br/><br/>
		+
		+	=The gene=
		+
		+	=== Basic information ===
		+
		+	* '''Locus tag:''' BSU11370
		+
		+	===Phenotypes of a mutant ===
		+
		+	=== Database entries ===
		+
		+	* '''DBTBS entry:''' no entry
		+
		+	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11086]
		+
		+	=== Additional information===
		+
		+
		+	=The protein=
		+
		+	=== Basic information/ Evolution ===
		+
		+	* '''Catalyzed reaction/ biological activity:'''
		+
		+	* '''Protein family:''' ABC transporter domain (according to Swiss-Prot)
		+
		+	* '''Paralogous protein(s):'''
		+
		+	=== Extended information on the protein ===
		+
		+	* '''Kinetic information:'''
		+
		+	* '''Domains:'''
		+
		+	* '''Modification:'''
		+
		+	* '''Cofactor(s):'''
		+
		+	* '''Effectors of protein activity:'''
		+
		+	* '''Interactions:'''
		+
		+	* '''Localization:''' cell membrane (according to Swiss-Prot)
		+
		+	=== Database entries ===
		+
		+	* '''Structure:'''
		+
		+	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P42065 P42065]
		+
		+	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU11370]
		+
		+	* '''E.C. number:'''
		+
		+	=== Additional information===
		+
		+	=Expression and regulation=
		+
		+	* '''Operon:''' ''[[appD]]-[[appF]]-[[appA]]-[[appB]]-[[appC]]''
		+
		+	* '''[[Sigma factor]]:'''
		+
		+	* '''Regulation:''' repressed by [[CodY]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
		+	** repressed during growth in the presence of branched chain amino acids ([[CodY]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
		+
		+	* '''Regulatory mechanism:''' [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
		+	** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
		+	** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
		+
		+	* '''Additional information:'''
		+
		+	=Biological materials =
		+
		+	* '''Mutant:'''
		+
		+	* '''Expression vector:'''
		+
		+	* '''lacZ fusion:'''
		+
		+	* '''GFP fusion:'''
		+
		+	* '''two-hybrid system:'''
		+
		+	* '''Antibody:'''
		+
		+	=Labs working on this gene/protein=
		+
		+	=Your additional remarks=
		+
		+	=References=
		+
		+	# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

← Older revision		Revision as of 11:58, 6 June 2009
Line 1:		Line 1:
−	#REDIRECT[appA/1]	+	#REDIRECT[[appA/1]]

← Older revision		Revision as of 11:58, 6 June 2009
Line 1:		Line 1:
−	* '''Description:''' oligopeptide ABC transporter (peptide-binding protein) <br/><br/>	+	#REDIRECT[appA/1]
−
−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''appA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| oligopeptide ABC transporter (peptide-binding protein))~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of oligopeptides~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 61 kDa, 5.733~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1629 bp, 543 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[appF]]'', ''[[appB]]''~~
−	\|-
−	~~\|style="background:~~#~~FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/appA_nucleotide.txt Gene sequence (+200bp) ]'''~~
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/appA_protein.txt Protein sequence]'''~~
−	\|-
−	~~\|colspan="2" style="background:#FAF8CC;color:#FF0000" align="center" \| '''Caution: The sequence for this gene in SubtiList contains errors~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:appA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−
−	~~<br/><br/><br/>~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU11380
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/appDFABC.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11087]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' bacterial solute-binding protein 5 family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:'''
−
−	* '''Localization:''' cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1XOC 1XOC] (complex with nonapeptide)
−
−	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P42061 P42061]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU11380]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[appD]]-[[appF]]-[[appA~~]]-[[appB]]-[[appC]]''~~
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:''' repressed by casamino acids [http:/~~/www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed], repressed by [[CodY]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]~~
−
−	* '''Regulatory mechanism:''' [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~[[Tony Wilkinson]], York University, U.K. [http://www.york.ac.uk/depts/chem/staff/ajw.html homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	# Mäder et al. (2002) Transcriptome and Proteome Analysis of ''Bacillus subtilis'' Gene Expression Modulated by Amino Acid Availability. ''J. Bacteriol'' '''184:''' 1844288-4295 [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
−	~~# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed~~]

@@ Line 38: / Line 38: @@
 === Basic information ===
-* '''Locus tag:'''
+* '''Locus tag:''' BSU11380
 ===Phenotypes of a mutant ===
@@ Line 83: / Line 83: @@
 * '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P42061 P42061]
-* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU11380 BSU11380]
+* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU11380]
 * '''E.C. number:'''

@@ Line 57: / Line 57: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:'''
+* '''Protein family:''' bacterial solute-binding protein 5 family (according to Swiss-Prot)
 * '''Paralogous protein(s):'''

@@ Line 79: / Line 79: @@
 === Database entries ===
-* '''Structure:'''
+* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1XOC 1XOC] (complex with nonapeptide)
 * '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P42061 P42061]