View source for RNase Y targets

{{RegulonTable|
Regulator=[[rny|RNase Y]]
}}

= RNAs that are targeted by [[rny|RNase Y]]=
* The targets listed below are affected >2.5 fold upon [[rny|RNase Y]] depletion {{PubMed|19779461}}

=== RNAs directly cleaved by [[rny|RNase Y]] ===

* the [[S-box]] [[riboswitch]] RNAs ''in vivo'' and ''in vitro'' {{PubMed|19779461}}
* processing of the ''[[gapA]]'' operon mRNA {{PubMed|19193632}} 
* initiates the degradation of ''[[rpsO]]'' mRNA {{PubMed|20418391}}
* ''[[infC]]-[[rpmI]]-[[rplT]]'' mRNA {{PubMed|21843271}}
* leader of the ''[[cwlO]]'' mRNA {{PubMed|24163346}}
* the [[RoxS]] [[sRNA]] {{PubMed|25643072}}
* the ''[[ppnKB]]'' mRNA {{PubMed|25643072}}

=== Increased RNA amount upon [[rny|RNase Y]] depletion ===

* ''[[trpE]]-[[trpD]]-[[trpC]]-[[trpF]]-[[trpB]]-[[trpA]]-[[hisC]]-[[tyrA]]-[[aroE]]'' {{PubMed|21815947}}
* ''[[yhbI]]-[[yhbJ]]-[[yhcA]]-[[yhcB]]-[[yhcC]]-[[yhcD]]-[[yhcE]]-[[yhcF]]-[[yhcG]]-[[yhcH]]-[[yhcI]]'' {{PubMed|21815947}}
* ''[[ysbA]]-[[ysbB]]'' {{PubMed|21815947}}
* ''[[yrhG]]'' {{PubMed|21815947}}
* ''[[maeA]]-[[ywkB]]'' {{PubMed|21815947}}
* ''[[nhaC]]'' {{PubMed|21815947}}
* ''[[guaC]]'' {{PubMed|21815947}}
* ''[[ydaB]]'' {{PubMed|21815947}}
* ''[[maeN]]'' {{PubMed|21815947}}
* ''[[cimH]]'' {{PubMed|21815947}}
* ''[[ynfC]]'' {{PubMed|21815947}}
* ''[[yrhE]]-[[yrhD]]'' {{PubMed|21815947}}
* ''[[yjbC]]-[[spx]]'' {{PubMed|21815947}}
* ''[[yrhF]]'' {{PubMed|21815947}}
* ''[[speD]]'' {{PubMed|21815947}}
* ''[[yhfH]]'' {{PubMed|21815947}}
* ''[[pabA]]-[[pabC]]'' {{PubMed|21815947}}
* ''[[yebC]]'' {{PubMed|21815947}}
* ''[[yurR]]-[[yurQ]]-[[frlB]]-[[frlO]]-[[frlN]]-[[frlM]]-[[frlD]]'' {{PubMed|21815947}}
* ''[[yuxJ]]'' {{PubMed|21815947}}
* ''[[lmrA]]-[[lmrB]]'' {{PubMed|21815947}}
* ''[[yrhH]]'' {{PubMed|21815947}}
* ''[[acoA]]-[[acoB]]-[[acoC]]-[[acoL]]'' {{PubMed|21815947}}
* ''[[ribU]]'' {{PubMed|21815947}}
* ''[[pbpA]]'' {{PubMed|21815947}}
* ''[[ytdI]]'' {{PubMed|21815947}}
* ''[[cggR]]-[[gapA]]'' {{PubMed|21815947}}
* ''[[yhdY]]'' {{PubMed|21815947}}
* ''[[ywcI]]'' {{PubMed|21815947}}
* ''[[yflS]]'' {{PubMed|21815947}}
* several [[SP-beta prophage]] genes, exemplified by ''[[yorW]]'' {{PubMed|21815947}}
* ''[[sinR]]'' {{PubMed|21815947}}
* ''[[sinI]]-[[sinR]]'' {{PubMed|21815947}}

=== Decreased RNA amount upon [[rny|RNase Y]] depletion ===

* ''[[slrR]]'' {{PubMed|21815947}} (this is likely due to the increased stability of the ''[[sinR]]'' mRNA upon [[rny|RNase Y]] depletion {{PubMed|21815947}})
* ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]'' {{PubMed|21815947}} (this is likely due to the increased stability of the ''[[sinR]]'' mRNA upon [[rny|RNase Y]] depletion {{PubMed|21815947}})
* ''[[ctaO]]'' {{PubMed|21815947}}
* ''[[lip]]'' {{PubMed|21815947}}
* ''[[sunT]]-[[bdbA]]-[[yolJ]]'' {{PubMed|21815947}}
* ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]'' {{PubMed|21815947}}
* ''[[tapA]]-[[sipW]]-[[tasA]]'' {{PubMed|21815947}} (this is likely due to the increased stability of the ''[[sinR]]'' mRNA upon [[rny|RNase Y]] depletion {{PubMed|21815947}})
* ''[[dhbA]]-[[dhbC]]-[[dhbE]]-[[dhbB]]-[[dhbF]]'' {{PubMed|21815947}}
* ''[[thrZ]]'' {{PubMed|21815947}}
* ''[[yfmG]]'' {{PubMed|21815947}}
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]'' {{PubMed|21815947}}
* ''[[wprA]]'' {{PubMed|21815947}}
* ''[[yxeK]]-[[yxeL]]-[[yxeM]]'' {{PubMed|21815947}}
* ''[[yxbB]]'' {{PubMed|21815947}}

= Important publications on [[rny|RNase Y]] targets =
<pubmed>22412379 23326572 21815947</pubmed>

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