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2026-04-10T17:09:10Z
User contributions
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http://subtiwiki.uni-goettingen.de/wiki//index.php?title=YerD&diff=121437
YerD
2010-03-22T18:20:05Z
<p>Vhentschke: /* Biological materials */</p>
<hr />
<div>* '''Description:''' general stress protein, similar to glutamate synthase (ferredoxin) <br/><br/><br />
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{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''yerD''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 58 kDa, 7.349 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1575 bp, 525 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yerC]]'', ''[[pcrB]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12479&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:yerD_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|}<br />
<br />
__TOC__<br />
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<br/><br/><br />
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=The gene=<br />
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=== Basic information ===<br />
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* '''Locus tag:''' BSU06590<br />
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===Phenotypes of a mutant ===<br />
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=== Database entries ===<br />
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* '''DBTBS entry:''' no entry<br />
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* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12832]<br />
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=== Additional information===<br />
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=The protein=<br />
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=== Basic information/ Evolution ===<br />
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* '''Catalyzed reaction/ biological activity:''' <br />
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* '''Protein family:'''<br />
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* '''Paralogous protein(s):''' [[GltA]]<br />
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=== Extended information on the protein ===<br />
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* '''Kinetic information:''' <br />
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* '''Domains:''' <br />
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* '''Modification:'''<br />
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* '''Cofactor(s):'''<br />
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* '''Effectors of protein activity:'''<br />
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* '''Interactions:'''<br />
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* '''Localization:'''<br />
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=== Database entries ===<br />
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* '''Structure:''' <br />
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* '''UniProt:''' [http://www.uniprot.org/uniprot/O34849 O34849]<br />
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU06590]<br />
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* '''E.C. number:'''<br />
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=== Additional information===<br />
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=Expression and regulation=<br />
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* '''Operon:''' <br />
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* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] <br />
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* '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]<br />
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* '''Regulatory mechanism:''' <br />
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* '''Additional information:''' <br />
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=Biological materials =<br />
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* '''Mutant:''' GP1184 (tet) available in [[Stülke]] lab<br />
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* '''Expression vector:'''<br />
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* '''lacZ fusion:'''<br />
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* '''GFP fusion:'''<br />
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* '''two-hybrid system:''' <br />
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* '''FLAG-tag construct:''' GP1187 (spc, based on [[pGP1331]]), available in [[Stülke]] lab<br />
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* '''Antibody:'''<br />
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=Labs working on this gene/protein=<br />
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=Your additional remarks=<br />
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=References=<br />
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<pubmed>15805528, </pubmed><br />
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[[Category:Protein-coding genes]]</div>
Vhentschke